Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC068724.3-201ENST00000625906 87 ntBASIC3.89□□□□□ -1.79
SOX3P41225 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC3.89□□□□□ -1.79
SOX3P41225 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SOX3P41225 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SOX3P41225 AC009229.4-201ENST00000623854 1947 ntBASIC3.89□□□□□ -1.79
SOX3P41225 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SOX3P41225 PHKBP1-201ENST00000450951 1951 ntBASIC3.89□□□□□ -1.79
SOX3P41225 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
SOX3P41225 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.89□□□□□ -1.79
SOX3P41225 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.88□□□□□ -1.79
SOX3P41225 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC3.88□□□□□ -1.79
SOX3P41225 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
SOX3P41225 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.88□□□□□ -1.79
SOX3P41225 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SOX3P41225 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SOX3P41225 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
SOX3P41225 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.88□□□□□ -1.79
SOX3P41225 AC019155.1-201ENST00000382242 574 ntBASIC3.88□□□□□ -1.79
SOX3P41225 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 AL592310.1-201ENST00000414330 671 ntBASIC3.88□□□□□ -1.79
SOX3P41225 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.88□□□□□ -1.79
SOX3P41225 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 RPS26P47-201ENST00000427219 348 ntBASIC3.88□□□□□ -1.79
SOX3P41225 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.88□□□□□ -1.79
SOX3P41225 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 ELOCP11-201ENST00000436690 332 ntBASIC3.88□□□□□ -1.79
SOX3P41225 RPL23AP46-201ENST00000438548 490 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 ELOCP16-201ENST00000444494 332 ntBASIC3.88□□□□□ -1.79
SOX3P41225 ZNF886P-201ENST00000450781 723 ntBASIC3.88□□□□□ -1.79
SOX3P41225 HMGB3P22-202ENST00000451823 572 ntBASIC3.88□□□□□ -1.79
SOX3P41225 APOOP2-201ENST00000461561 539 ntBASIC3.88□□□□□ -1.79
SOX3P41225 RPS7P7-201ENST00000463499 571 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AC006511.1-201ENST00000470614 315 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AC006517.1-201ENST00000480485 328 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AC118282.2-201ENST00000508739 374 ntBASIC3.88□□□□□ -1.79
SOX3P41225 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC3.88□□□□□ -1.79
SOX3P41225 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.88□□□□□ -1.79
SOX3P41225 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 PDCD5P1-201ENST00000543528 309 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.88□□□□□ -1.79
SOX3P41225 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.88□□□□□ -1.79
SOX3P41225 HMGB3P26-201ENST00000560051 582 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
SOX3P41225 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.88□□□□□ -1.79
SOX3P41225 AC018552.3-201ENST00000567416 561 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.88□□□□□ -1.79
SOX3P41225 MIR4666A-201ENST00000580160 79 ntBASIC3.88□□□□□ -1.79
SOX3P41225 RN7SL600P-201ENST00000581811 299 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX3P41225 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.88□□□□□ -1.79
SOX3P41225 AP001542.2-201ENST00000593141 364 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AL450336.1-201ENST00000605180 586 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AL583856.2-201ENST00000606298 543 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AC009237.15-201ENST00000610252 501 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AL121895.2-201ENST00000619558 447 ntBASIC3.88□□□□□ -1.79
SOX3P41225 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.88□□□□□ -1.79
SOX3P41225 MIR492-201ENST00000638676 116 ntBASIC3.88□□□□□ -1.79
SOX3P41225 AL118496.1-201ENST00000440201 1812 ntBASIC3.88□□□□□ -1.79
SOX3P41225 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
SOX3P41225 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
SOX3P41225 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
SOX3P41225 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 USP9YP4-201ENST00000424401 1745 ntBASIC3.87□□□□□ -1.79
SOX3P41225 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.87□□□□□ -1.79
SOX3P41225 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
SOX3P41225 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
SOX3P41225 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
SOX3P41225 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
SOX3P41225 RNA5SP479-201ENST00000364858 117 ntBASIC3.87□□□□□ -1.79
SOX3P41225 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 OR1L1-202ENST00000373686 1083 ntBASIC3.87□□□□□ -1.79
SOX3P41225 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 SNORD116-12-201ENST00000384468 92 ntBASIC3.87□□□□□ -1.79
SOX3P41225 RNU6-906P-201ENST00000384700 70 ntBASIC3.87□□□□□ -1.79
SOX3P41225 MIR1179-201ENST00000408703 91 ntBASIC3.87□□□□□ -1.79
SOX3P41225 RNA5SP317-201ENST00000410176 116 ntBASIC3.87□□□□□ -1.79
SOX3P41225 RNA5SP311-201ENST00000411290 116 ntBASIC3.87□□□□□ -1.79
SOX3P41225 RNU6-575P-201ENST00000411326 105 ntBASIC3.87□□□□□ -1.79
SOX3P41225 EIF4A1P3-201ENST00000411521 244 ntBASIC3.87□□□□□ -1.79
SOX3P41225 SSR1P2-201ENST00000415208 787 ntBASIC3.87□□□□□ -1.79
SOX3P41225 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.87□□□□□ -1.79
SOX3P41225 RPL23AP89-201ENST00000439324 255 ntBASIC3.87□□□□□ -1.79
SOX3P41225 VN1R25P-201ENST00000443385 738 ntBASIC3.87□□□□□ -1.79
SOX3P41225 AL589880.1-201ENST00000448271 287 ntBASIC3.87□□□□□ -1.79
SOX3P41225 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.87□□□□□ -1.79
SOX3P41225 AC092155.2-201ENST00000454675 477 ntBASIC3.87□□□□□ -1.79
SOX3P41225 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.87□□□□□ -1.79
SOX3P41225 SNORD11.1-201ENST00000459482 85 ntBASIC3.87□□□□□ -1.79
SOX3P41225 NAP1L1P3-201ENST00000462291 880 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms