Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
BRCA1P38398 RNU6-1320P-201ENST00000390838 107 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 RNU6-1269P-201ENST00000391139 107 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 ATP5HP2-201ENST00000433885 485 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 AC006028.1-201ENST00000438379 402 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 ELOCP8-201ENST00000439309 332 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 ELOCP15-201ENST00000442090 332 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.09□□□□□ -1.75
BRCA1P38398 RNU6-599P-201ENST00000459383 107 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 RNU6-1193P-201ENST00000459461 107 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 RPS3AP43-201ENST00000479743 781 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
BRCA1P38398 RNA5SP154-201ENST00000516193 111 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.09□□□□□ -1.75
BRCA1P38398 RPL12P50-201ENST00000603116 116 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 AC103881.1-201ENST00000603476 538 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.09□□□□□ -1.75
BRCA1P38398 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC4.09□□□□□ -1.75
BRCA1P38398 RNU6-368P-201ENST00000620928 107 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 RNU6-538P-201ENST00000622329 107 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.09□□□□□ -1.75
BRCA1P38398 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC4.09□□□□□ -1.75
BRCA1P38398 AP000542.2-201ENST00000623199 6179 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 NMD3P1-201ENST00000439704 1488 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 ZNF826P-207ENST00000622273 1910 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 AC011266.1-201ENST00000624119 3569 ntBASIC4.09□□□□□ -1.75
BRCA1P38398 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.09□□□□□ -1.75
BRCA1P38398 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
BRCA1P38398 XGY1-201ENST00000381172 446 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.76
BRCA1P38398 AL031679.1-201ENST00000400616 525 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.09□□□□□ -1.76
BRCA1P38398 SETP5-201ENST00000437270 562 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.09□□□□□ -1.76
BRCA1P38398 AC092809.1-201ENST00000441469 474 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 DNAJC19P8-201ENST00000452887 259 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 AC068724.1-201ENST00000487100 792 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 RPS26P15-201ENST00000488067 348 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 HAUS1P1-201ENST00000505275 832 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 AL512310.1-201ENST00000548639 172 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.09□□□□□ -1.76
BRCA1P38398 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC4.09□□□□□ -1.76
BRCA1P38398 AL133457.1-201ENST00000564251 987 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.09□□□□□ -1.76
BRCA1P38398 MRPS35P3-201ENST00000603189 709 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 AL159169.2-201ENST00000610061 1269 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 AL590240.3-201ENST00000621416 943 ntBASIC4.09□□□□□ -1.76
BRCA1P38398 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
BRCA1P38398 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
BRCA1P38398 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
BRCA1P38398 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
BRCA1P38398 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
BRCA1P38398 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.08□□□□□ -1.76
BRCA1P38398 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
BRCA1P38398 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.08□□□□□ -1.76
BRCA1P38398 AL121834.1-202ENST00000404494 277 ntBASIC4.08□□□□□ -1.76
BRCA1P38398 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC4.08□□□□□ -1.76
BRCA1P38398 RPL23AP82-202ENST00000427528 469 ntBASIC4.08□□□□□ -1.76
BRCA1P38398 YWHAEP5-201ENST00000431545 765 ntBASIC4.08□□□□□ -1.76
BRCA1P38398 CENPBD1P1-201ENST00000464061 469 ntBASIC4.08□□□□□ -1.76
BRCA1P38398 AC025445.1-201ENST00000502728 300 ntBASIC4.08□□□□□ -1.76
BRCA1P38398 MYL12AP1-201ENST00000518490 515 ntBASIC4.08□□□□□ -1.76
BRCA1P38398 AC022616.2-201ENST00000523185 300 ntBASIC4.08□□□□□ -1.76
BRCA1P38398 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC4.08□□□□□ -1.76
BRCA1P38398 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.08□□□□□ -1.76
BRCA1P38398 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.08□□□□□ -1.76
BRCA1P38398 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
BRCA1P38398 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
BRCA1P38398 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
BRCA1P38398 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
BRCA1P38398 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
BRCA1P38398 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC4.08□□□□□ -1.76
BRCA1P38398 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
BRCA1P38398 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.08□□□□□ -1.76
BRCA1P38398 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
BRCA1P38398 AL672296.1-201ENST00000427780 2158 ntBASIC4.07□□□□□ -1.76
BRCA1P38398 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
BRCA1P38398 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.07□□□□□ -1.76
BRCA1P38398 RAB28P3-201ENST00000448325 597 ntBASIC4.07□□□□□ -1.76
BRCA1P38398 RN7SKP132-201ENST00000516001 208 ntBASIC4.07□□□□□ -1.76
BRCA1P38398 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC4.07□□□□□ -1.76
BRCA1P38398 AC006518.1-201ENST00000541449 943 ntBASIC4.07□□□□□ -1.76
BRCA1P38398 AC022080.3-201ENST00000544433 482 ntBASIC4.07□□□□□ -1.76
BRCA1P38398 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC4.07□□□□□ -1.76
BRCA1P38398 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.07□□□□□ -1.76
BRCA1P38398 AC005242.1-201ENST00000585658 438 ntBASIC4.07□□□□□ -1.76
BRCA1P38398 AC100793.4-201ENST00000613683 429 ntBASIC4.07□□□□□ -1.76
BRCA1P38398 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
BRCA1P38398 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
BRCA1P38398 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
BRCA1P38398 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
BRCA1P38398 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
BRCA1P38398 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.07□□□□□ -1.76
BRCA1P38398 AC017007.4-201ENST00000503353 1352 ntBASIC4.07□□□□□ -1.76
BRCA1P38398 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
BRCA1P38398 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
BRCA1P38398 MIR93-201ENST00000385024 80 ntBASIC4.07□□□□□ -1.76
BRCA1P38398 AL160275.2-201ENST00000412010 394 ntBASIC4.07□□□□□ -1.76
BRCA1P38398 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms