Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.28□□□□□ -1.88
COL5A1P20908 SCARNA20.6-201ENST00000517251 106 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.28□□□□□ -1.88
COL5A1P20908 AC020914.4-201ENST00000597690 277 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC3.28□□□□□ -1.88
COL5A1P20908 AC007656.2-201ENST00000624902 4547 ntBASIC3.28□□□□□ -1.89
COL5A1P20908 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.27□□□□□ -1.89
COL5A1P20908 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A1P20908 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A1P20908 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC3.27□□□□□ -1.89
COL5A1P20908 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A1P20908 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A1P20908 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A1P20908 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A1P20908 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A1P20908 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.27□□□□□ -1.89
COL5A1P20908 FTLP6-201ENST00000355274 422 ntBASIC3.27□□□□□ -1.89
COL5A1P20908 SNORA5B-201ENST00000363786 132 ntBASIC3.27□□□□□ -1.89
COL5A1P20908 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.27□□□□□ -1.89
COL5A1P20908 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.27□□□□□ -1.89
COL5A1P20908 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.27□□□□□ -1.89
COL5A1P20908 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.27□□□□□ -1.89
COL5A1P20908 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.27□□□□□ -1.89
COL5A1P20908 APOOP4-201ENST00000513530 597 ntBASIC3.27□□□□□ -1.89
COL5A1P20908 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.27□□□□□ -1.89
COL5A1P20908 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.27□□□□□ -1.89
COL5A1P20908 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC3.27□□□□□ -1.89
COL5A1P20908 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.27□□□□□ -1.89
COL5A1P20908 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.27□□□□□ -1.89
COL5A1P20908 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.27□□□□□ -1.89
COL5A1P20908 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC3.27□□□□□ -1.89
COL5A1P20908 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.27□□□□□ -1.89
COL5A1P20908 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A1P20908 AC011503.2-201ENST00000594230 1500 ntBASIC3.27□□□□□ -1.89
COL5A1P20908 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL5A1P20908 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.26□□□□□ -1.89
COL5A1P20908 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL5A1P20908 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.26□□□□□ -1.89
COL5A1P20908 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.26□□□□□ -1.89
COL5A1P20908 RPL7L1P1-201ENST00000448259 785 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC3.26□□□□□ -1.89
COL5A1P20908 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.26□□□□□ -1.89
COL5A1P20908 HIGD1AP1-201ENST00000550979 275 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 AC099489.2-201ENST00000574976 260 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.26□□□□□ -1.89
COL5A1P20908 BDH2P1-201ENST00000602288 736 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 AL049844.2-201ENST00000604280 628 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 Z82195.1-201ENST00000604558 398 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 AC015802.5-201ENST00000607478 399 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 MIR7106-201ENST00000612419 65 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 AC007998.5-201ENST00000622938 237 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL5A1P20908 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL5A1P20908 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.26□□□□□ -1.89
COL5A1P20908 HSPA8P19-201ENST00000505359 1517 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 LINC01355-201ENST00000566551 5444 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL5A1P20908 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL5A1P20908 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL5A1P20908 RNU6-729P-201ENST00000384399 107 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 ARF4P3-201ENST00000397387 509 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 RNA5SP229-201ENST00000410809 99 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 AC002524.1-201ENST00000411687 547 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 AC063979.1-201ENST00000415539 377 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 AL158071.1-201ENST00000430315 461 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.26□□□□□ -1.89
COL5A1P20908 ACTG1P13-201ENST00000486987 1043 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 OR2A20P-203ENST00000498397 1268 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC3.26□□□□□ -1.89
COL5A1P20908 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.26□□□□□ -1.89
COL5A1P20908 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.26□□□□□ -1.89
COL5A1P20908 AC135001.1-201ENST00000544546 283 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.26□□□□□ -1.89
COL5A1P20908 AC006557.5-201ENST00000603126 811 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.26□□□□□ -1.89
COL5A1P20908 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL5A1P20908 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.25□□□□□ -1.89
COL5A1P20908 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
COL5A1P20908 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC3.25□□□□□ -1.89
COL5A1P20908 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL5A1P20908 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.25□□□□□ -1.89
COL5A1P20908 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
COL5A1P20908 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
COL5A1P20908 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
COL5A1P20908 RNA5SP235-201ENST00000365411 114 ntBASIC3.25□□□□□ -1.89
COL5A1P20908 SNORA44-201ENST00000384584 132 ntBASIC3.25□□□□□ -1.89
COL5A1P20908 AL121877.1-201ENST00000453704 622 ntBASIC3.25□□□□□ -1.89
COL5A1P20908 RPL7P48-201ENST00000461513 746 ntBASIC3.25□□□□□ -1.89
COL5A1P20908 GOLGA5P1-201ENST00000507317 980 ntBASIC3.25□□□□□ -1.89
COL5A1P20908 PCBP2P3-201ENST00000509726 843 ntBASIC3.25□□□□□ -1.89
COL5A1P20908 ARL2BPP6-201ENST00000512757 439 ntBASIC3.25□□□□□ -1.89
COL5A1P20908 AC026801.2-201ENST00000515352 425 ntBASIC3.25□□□□□ -1.89
COL5A1P20908 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.25□□□□□ -1.89
COL5A1P20908 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC3.25□□□□□ -1.89
COL5A1P20908 AC026333.2-201ENST00000542164 106 ntBASIC3.25□□□□□ -1.89
COL5A1P20908 AC067852.3-201ENST00000589177 561 ntBASIC3.25□□□□□ -1.89
COL5A1P20908 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.25□□□□□ -1.89
COL5A1P20908 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.25□□□□□ -1.89
COL5A1P20908 ATP5A1P2-202ENST00000616464 443 ntBASIC3.25□□□□□ -1.89
COL5A1P20908 AL158196.1-201ENST00000616786 434 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms