Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC146944.2-203ENST00000502493 354 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC010460.1-201ENST00000507087 466 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 ATP1B1P1-201ENST00000509767 915 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 PTGES3P3-201ENST00000511479 482 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC139495.1-202ENST00000513164 354 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 RNA5SP73-201ENST00000516744 108 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 HIGD1AP6-201ENST00000521833 279 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 IFITM8P-201ENST00000522529 394 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC104115.2-201ENST00000523026 687 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AF279873.1-201ENST00000523393 313 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 CBX3P5-201ENST00000552017 521 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC023824.3-201ENST00000569003 562 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC126365.2-201ENST00000580630 379 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC022069.1-201ENST00000582910 658 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC007566.2-201ENST00000603642 413 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC090912.3-201ENST00000609775 533 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 AC007275.1-201ENST00000621243 671 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 MTCO1P24-201ENST00000515438 1558 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 DCAF13P1-201ENST00000495256 1330 ntBASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.17□□□□□ -1.74
PCDHGA1Q9Y5H4 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 MTND5P3-201ENST00000438536 1800 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 MARK2P15-201ENST00000432204 2186 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 SNORA70.4-201ENST00000365509 134 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 RNU6-549P-201ENST00000384433 107 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 MIR200C-201ENST00000384980 68 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 RNA5SP372-201ENST00000390836 115 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 DSTNP4-201ENST00000399472 474 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 LAP3P1-201ENST00000403648 294 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 RPL21P65-201ENST00000406094 466 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 RN7SKP235-201ENST00000410662 305 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 UBE2V1P9-201ENST00000414760 368 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 MFSD13B-201ENST00000420133 1290 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 EIF1P3-201ENST00000423841 334 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 USP9YP7-201ENST00000436723 430 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 ARL4AP3-201ENST00000441452 574 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 Z77249.1-201ENST00000444622 1175 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 USP9YP32-201ENST00000452432 430 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 HMGB3P30-201ENST00000457863 606 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AP000873.1-201ENST00000463987 400 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 RPL23AP2-201ENST00000471227 466 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 RNU4-60P-201ENST00000517239 135 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC090281.1-201ENST00000523019 276 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 OR8K4P-201ENST00000534608 872 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 MTCYBP28-201ENST00000566728 1132 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC015912.2-201ENST00000571053 181 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 MIR4789-201ENST00000577469 82 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC091178.1-203ENST00000584586 279 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 uc_338.32-201ENST00000615087 172 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 AL049777.1-201ENST00000622740 518 ntBASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PCDHGA1Q9Y5H4 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
PCDHGA1Q9Y5H4 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
PCDHGA1Q9Y5H4 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms