Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 DPRXP1-201ENST00000426312 460 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 Z93242.1-201ENST00000427102 353 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 CKS1BP5-201ENST00000434172 273 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 DDX39BP2-208ENST00000453923 258 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AC116533.1-201ENST00000459748 321 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 RPS23P7-201ENST00000466210 444 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 RN7SL303P-201ENST00000469773 251 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 RN7SL860P-201ENST00000473738 223 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 S100A11P1-201ENST00000477525 312 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 VPS26AP1-201ENST00000483197 979 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AC090013.1-201ENST00000485147 480 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 RN7SL812P-201ENST00000493791 279 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AC025445.1-201ENST00000502728 300 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 AP001317.1-201ENST00000531194 960 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 AC079587.1-201ENST00000603846 277 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AC113403.1-201ENST00000604910 193 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 uc_338.13-201ENST00000618243 179 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 MIR6891-201ENST00000618788 93 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 MIR6810-201ENST00000622701 70 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 OR1S1-201ENST00000624470 978 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AC010608.3-201ENST00000625048 527 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS28Q9UK41 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS28Q9UK41 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS28Q9UK41 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS28Q9UK41 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 AC117529.2-201ENST00000512159 2068 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AL355578.1-201ENST00000607405 1328 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS28Q9UK41 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS28Q9UK41 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS28Q9UK41 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS28Q9UK41 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS28Q9UK41 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS28Q9UK41 RNA5SP151-201ENST00000365632 117 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 MIR1250-201ENST00000408098 113 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 RN7SKP167-201ENST00000411047 285 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 UBTFL3-201ENST00000418934 1024 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 CHIAP3-201ENST00000423668 1133 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 RPF2P1-201ENST00000424137 906 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 AC114973.1-201ENST00000429057 632 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 RPS3AP54-201ENST00000435535 734 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 UBE2V1P3-201ENST00000439651 417 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AL590399.6-201ENST00000446396 307 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS28Q9UK41 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS28Q9UK41 AL645939.1-201ENST00000453429 797 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AC104164.3-201ENST00000467363 1258 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AC109327.1-201ENST00000471666 403 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 UBTFL6-201ENST00000477929 1024 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 BOLA3P3-201ENST00000505182 232 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 TMEM248P1-201ENST00000510579 951 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 SCARNA1-201ENST00000517138 166 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AP001207.2-201ENST00000519490 539 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 IGLV3-26-201ENST00000520756 302 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 AC091057.3-201ENST00000602684 733 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AL009028.1-201ENST00000604895 802 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 AP002360.3-201ENST00000607673 710 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 MLECP1-201ENST00000615893 709 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 PABPC1P7-201ENST00000413177 1513 ntBASIC4.5□□□□□ -1.69
VPS28Q9UK41 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS28Q9UK41 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
VPS28Q9UK41 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms