Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 PAPPA-AS1-201ENST00000445861 2450 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 Z95327.2-201ENST00000414579 1873 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 RACGAP1P-201ENST00000550663 1879 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 Y_RNA.5-201ENST00000362334 102 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 SNORD116-11-201ENST00000383882 92 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 OFD1P1Y-201ENST00000411756 1225 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 BX323014.1-201ENST00000412876 237 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 RPL21P50-201ENST00000417698 477 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 CHEK2P5-201ENST00000423877 246 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC092013.1-201ENST00000438795 332 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC020550.1-201ENST00000447385 163 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AL034399.1-201ENST00000451535 380 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC011225.1-201ENST00000457751 369 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 UBA52P7-201ENST00000486088 380 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC008638.1-201ENST00000506035 866 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 RNU4ATAC7P-201ENST00000516280 125 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 FAM60DP-201ENST00000524174 632 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC079905.1-201ENST00000549280 475 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 NF1P5-201ENST00000588287 448 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC111186.1-201ENST00000604684 130 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 PLCE1P1-201ENST00000622094 305 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AC107980.1-201ENST00000558671 3355 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AL606537.1-201ENST00000607258 2011 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 ANAPC1P1-201ENST00000426186 2145 ntBASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIMD1Q9UGP4 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 RNA5SP391-201ENST00000363456 119 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 RNU6-310P-201ENST00000384655 107 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 Y_RNA.557-201ENST00000384680 107 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 AL391417.1-201ENST00000404100 426 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 RN7SKP296-201ENST00000411185 341 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 RPL23AP38-201ENST00000423801 469 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 RPL12P12-201ENST00000424633 501 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 CALM2P2-201ENST00000428512 440 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 RN7SL705P-201ENST00000481678 294 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 RN7SL382P-201ENST00000482631 282 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 RPL12P30-201ENST00000488389 499 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 H3F3AP3-201ENST00000497682 407 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 COX7A2P2-201ENST00000505291 250 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 RNU6-189P-201ENST00000516120 101 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 snoU109.6-201ENST00000516831 118 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 RNU6-1271P-201ENST00000517049 105 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 AL133399.1-201ENST00000527476 298 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 AC135001.1-201ENST00000544546 283 ntBASIC6.81□□□□□ -1.32
LIMD1Q9UGP4 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms