Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNA5SP366-201ENST00000365454 123 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AC234772.1-201ENST00000377927 937 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 RNU6-339P-201ENST00000384310 107 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 RBMY1KP-201ENST00000423480 476 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AC093698.1-201ENST00000423843 571 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AC006548.1-201ENST00000427470 102 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 UBE2V1P3-201ENST00000439651 417 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 RN7SL385P-201ENST00000468873 276 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 VN1R17P-201ENST00000472048 1090 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 RPS4XP13-201ENST00000483219 789 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AC002456.2-201ENST00000509356 380 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AC008694.2-201ENST00000517591 306 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AC008802.1-201ENST00000519121 791 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AC006518.2-201ENST00000542513 940 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 RPL21P7-201ENST00000557463 483 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AC005776.1-201ENST00000603164 290 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 MIR378J-201ENST00000611988 109 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 MIR6716-201ENST00000613413 80 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 CR381572.1-201ENST00000625098 102 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AL121594.5-201ENST00000631724 573 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 BX649567.1-201ENST00000642071 1134 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 AL627171.1-201ENST00000618845 1308 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 RNU6-236P-201ENST00000363886 106 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AL139098.1-201ENST00000407291 389 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 OFD1P2Y-201ENST00000421895 1149 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 RPS6P14-201ENST00000425165 719 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AC073143.1-201ENST00000436316 395 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 RNU7-140P-201ENST00000459546 60 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 RPL35P6-201ENST00000490024 372 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 PARP4P3-201ENST00000510265 317 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 IGKV2D-19-201ENST00000523346 262 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 OR8G5-201ENST00000524943 1041 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 VN1R87P-201ENST00000596706 487 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CHMP4AQ9BY43 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 AC092435.4-201ENST00000623012 4159 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 AC008033.1-201ENST00000216407 1162 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 MIR331-201ENST00000362302 94 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 RNU6-353P-201ENST00000364266 108 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 SNORA70.2-201ENST00000364506 135 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 RNA5SP22-201ENST00000365393 109 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 OR6C69P-201ENST00000394268 893 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 MTCO3P12-201ENST00000416718 547 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 NIPA2P1-201ENST00000426223 976 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 AC239367.2-201ENST00000447309 705 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 RPL7P59-201ENST00000447700 943 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 ANP32BP2-201ENST00000454525 545 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 RPL23AP81-201ENST00000455252 467 ntBASIC5.61□□□□□ -1.51
CHMP4AQ9BY43 MTCO3P2-201ENST00000457365 171 ntBASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms