Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RNU1-128P-201ENST00000516704 160 ntBASIC3.99□□□□□ -1.77
TNFRSF4P43489 RNU6-352P-201ENST00000516908 107 ntBASIC3.99□□□□□ -1.77
TNFRSF4P43489 RN7SKP96-201ENST00000516948 297 ntBASIC3.99□□□□□ -1.77
TNFRSF4P43489 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 AL391497.1-201ENST00000608671 547 ntBASIC3.99□□□□□ -1.77
TNFRSF4P43489 MIR6864-201ENST00000617935 70 ntBASIC3.99□□□□□ -1.77
TNFRSF4P43489 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.99□□□□□ -1.77
TNFRSF4P43489 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 AC004777.1-201ENST00000624317 287 ntBASIC3.99□□□□□ -1.77
TNFRSF4P43489 AC106858.1-201ENST00000637497 429 ntBASIC3.99□□□□□ -1.77
TNFRSF4P43489 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
TNFRSF4P43489 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 MTCO1P6-201ENST00000481192 1384 ntBASIC3.99□□□□□ -1.77
TNFRSF4P43489 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 AC090229.1-201ENST00000590983 1609 ntBASIC3.99□□□□□ -1.77
TNFRSF4P43489 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.99□□□□□ -1.77
TNFRSF4P43489 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
TNFRSF4P43489 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TNFRSF4P43489 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
TNFRSF4P43489 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TNFRSF4P43489 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 MARK2P15-201ENST00000432204 2186 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 HDGFP1-201ENST00000405943 252 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 CRYBB2P1-203ENST00000415709 538 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 AC005008.1-201ENST00000456151 612 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 RN7SL585P-201ENST00000470538 280 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 RPS4XP6-201ENST00000477670 797 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AC006517.1-201ENST00000480485 328 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 AC008885.2-201ENST00000509506 930 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AC026403.1-201ENST00000518938 295 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 SERPINE4P-201ENST00000554978 281 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 AC087499.8-201ENST00000578406 226 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 VN1R88P-201ENST00000596787 292 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 BNIP3P4-201ENST00000604946 565 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AC018926.1-201ENST00000616335 435 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AC078880.5-201ENST00000617845 421 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AC124312.6-202ENST00000623624 418 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AC093875.1-201ENST00000623688 504 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 MIR6715B-201ENST00000637172 77 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 ZNF285B-201ENST00000561698 1767 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 XPOTP1-201ENST00000443317 2398 ntBASIC3.98□□□□□ -1.77
TNFRSF4P43489 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
TNFRSF4P43489 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.98□□□□□ -1.77
TNFRSF4P43489 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
TNFRSF4P43489 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.97□□□□□ -1.77
TNFRSF4P43489 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
TNFRSF4P43489 AC000123.3-201ENST00000624029 4975 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.97□□□□□ -1.77
TNFRSF4P43489 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
TNFRSF4P43489 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
TNFRSF4P43489 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
TNFRSF4P43489 RNU6-984P-201ENST00000363236 109 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 SNORA70.4-201ENST00000365509 134 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 RNU6-354P-201ENST00000383862 107 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 RNU6-610P-201ENST00000384264 107 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 PRRC2CP1-201ENST00000404428 159 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.97□□□□□ -1.77
TNFRSF4P43489 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.97□□□□□ -1.77
TNFRSF4P43489 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.97□□□□□ -1.77
TNFRSF4P43489 AC241520.1-201ENST00000422654 1099 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC3.97□□□□□ -1.77
TNFRSF4P43489 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.97□□□□□ -1.77
TNFRSF4P43489 YME1L1P1-201ENST00000429435 297 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 MTCO1P54-201ENST00000430139 712 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.97□□□□□ -1.77
TNFRSF4P43489 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.97□□□□□ -1.77
TNFRSF4P43489 SDR42E1P3-201ENST00000438345 502 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 AC083863.1-201ENST00000438811 231 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 AL096829.2-201ENST00000446582 742 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 AL162388.1-201ENST00000450912 352 ntBASIC3.97□□□□□ -1.77
TNFRSF4P43489 AC233982.1-201ENST00000451247 436 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 145.2 ms