Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.58□□□□□ -1.68
PTPN9P43378 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 PTMAP3-201ENST00000447474 330 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC4.58□□□□□ -1.68
PTPN9P43378 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.58□□□□□ -1.68
PTPN9P43378 PPIAP21-201ENST00000464473 501 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 AC006511.1-201ENST00000470614 315 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 ATP1B1P1-201ENST00000509767 915 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 AC008837.2-201ENST00000513076 418 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 NDUFB4P12-201ENST00000513465 390 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.58□□□□□ -1.68
PTPN9P43378 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.58□□□□□ -1.68
PTPN9P43378 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.58□□□□□ -1.68
PTPN9P43378 AC005832.3-201ENST00000537929 631 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
PTPN9P43378 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.58□□□□□ -1.68
PTPN9P43378 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.58□□□□□ -1.68
PTPN9P43378 AC018552.3-201ENST00000567416 561 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.58□□□□□ -1.68
PTPN9P43378 MIR4715-201ENST00000584117 79 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.58□□□□□ -1.68
PTPN9P43378 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.58□□□□□ -1.68
PTPN9P43378 AL390816.3-201ENST00000604527 1066 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.58□□□□□ -1.68
PTPN9P43378 AL138721.1-201ENST00000616756 179 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
PTPN9P43378 MIR4278-201ENST00000636094 69 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
PTPN9P43378 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
PTPN9P43378 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
PTPN9P43378 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTPN9P43378 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.57□□□□□ -1.68
PTPN9P43378 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
PTPN9P43378 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
PTPN9P43378 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.57□□□□□ -1.68
PTPN9P43378 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
PTPN9P43378 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PTPN9P43378 RNA5SP28-201ENST00000363841 119 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 AC019155.1-201ENST00000382242 574 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 RNU6-157P-201ENST00000383957 107 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 AL161909.1-201ENST00000397390 712 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
PTPN9P43378 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC4.57□□□□□ -1.68
PTPN9P43378 ELOCP19-201ENST00000411919 318 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.57□□□□□ -1.68
PTPN9P43378 NRBF2P2-201ENST00000413087 861 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.57□□□□□ -1.68
PTPN9P43378 AC245028.1-201ENST00000423259 256 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.57□□□□□ -1.68
PTPN9P43378 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.57□□□□□ -1.68
PTPN9P43378 SEPT7P5-201ENST00000434048 306 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 FGF7P5-201ENST00000441829 291 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 RPL23AP76-201ENST00000441860 458 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.57□□□□□ -1.68
PTPN9P43378 RPL21P134-201ENST00000453468 483 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC4.57□□□□□ -1.68
PTPN9P43378 NECAP1P2-201ENST00000455668 727 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 AL133477.1-201ENST00000457472 514 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.57□□□□□ -1.68
PTPN9P43378 AC126121.1-201ENST00000482313 553 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 AC093534.1-201ENST00000504977 132 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 WBP1LP4-201ENST00000505043 344 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 AC008694.2-201ENST00000517591 306 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 AP001207.1-201ENST00000524051 481 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PTPN9P43378 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.57□□□□□ -1.68
PTPN9P43378 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PTPN9P43378 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
PTPN9P43378 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.57□□□□□ -1.68
PTPN9P43378 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC4.57□□□□□ -1.68
PTPN9P43378 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC4.57□□□□□ -1.68
PTPN9P43378 AC090948.1-201ENST00000607464 549 ntBASIC4.57□□□□□ -1.68
PTPN9P43378 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.57□□□□□ -1.68
PTPN9P43378 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.57□□□□□ -1.68
PTPN9P43378 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PTPN9P43378 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
PTPN9P43378 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTPN9P43378 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.56□□□□□ -1.68
PTPN9P43378 KPNA2P2-201ENST00000419546 1489 ntBASIC4.56□□□□□ -1.68
PTPN9P43378 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
PTPN9P43378 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN9P43378 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN9P43378 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN9P43378 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.56□□□□□ -1.68
PTPN9P43378 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
PTPN9P43378 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN9P43378 SUGT1P1-201ENST00000379514 476 ntBASIC4.56□□□□□ -1.68
PTPN9P43378 SNORA11F-201ENST00000408237 128 ntBASIC4.56□□□□□ -1.68
PTPN9P43378 RNA5SP146-201ENST00000410743 123 ntBASIC4.56□□□□□ -1.68
PTPN9P43378 MTND4P22-201ENST00000413116 1169 ntBASIC4.56□□□□□ -1.68
PTPN9P43378 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC4.56□□□□□ -1.68
PTPN9P43378 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN9P43378 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms