Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HOXC9P31274 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXC9P31274 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXC9P31274 SNORA72.3-201ENST00000365074 132 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 OR52E6-202ENST00000379946 954 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 RNU6-468P-201ENST00000384003 109 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 RPS7P15-201ENST00000415804 584 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 AC008280.1-201ENST00000418851 412 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 ELOCP6-201ENST00000429066 328 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 AL365440.1-201ENST00000436135 2167 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.93□□□□□ -1.62
HOXC9P31274 ELOCP12-201ENST00000458706 328 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.93□□□□□ -1.62
HOXC9P31274 HAUS1P1-201ENST00000505275 832 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 SNORA70.18-201ENST00000516696 98 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 SNORA70.24-201ENST00000517233 118 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HOXC9P31274 OR8X1P-201ENST00000534542 869 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.93□□□□□ -1.62
HOXC9P31274 AC008011.1-201ENST00000545989 227 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC4.93□□□□□ -1.62
HOXC9P31274 AC023825.1-201ENST00000566704 1030 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 AC008507.2-201ENST00000588402 1176 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 AC245884.10-201ENST00000597355 337 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 AC011492.1-201ENST00000600023 315 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXC9P31274 AC128687.2-201ENST00000609657 566 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
HOXC9P31274 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXC9P31274 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC4.93□□□□□ -1.62
HOXC9P31274 AC093535.2-201ENST00000624769 2326 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXC9P31274 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
HOXC9P31274 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.93□□□□□ -1.62
HOXC9P31274 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXC9P31274 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HOXC9P31274 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXC9P31274 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXC9P31274 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HOXC9P31274 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HOXC9P31274 RNU6-525P-201ENST00000363685 104 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 RNA5SP267-201ENST00000364893 126 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 RNU6-452P-201ENST00000384406 107 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXC9P31274 LINC01347-201ENST00000417964 355 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AC023128.2-201ENST00000420880 1223 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AC091390.3-201ENST00000426478 338 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 DEFB130D-201ENST00000426866 237 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 TRBV26OR9-2-201ENST00000432077 293 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXC9P31274 AC097499.1-201ENST00000444277 208 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AC006480.1-201ENST00000449887 378 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 EIF4A1P11-201ENST00000451239 222 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 RBMY2UP-201ENST00000453474 324 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXC9P31274 SETP14-201ENST00000497538 873 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXC9P31274 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HOXC9P31274 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXC9P31274 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.92□□□□□ -1.62
HOXC9P31274 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXC9P31274 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.92□□□□□ -1.62
HOXC9P31274 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXC9P31274 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXC9P31274 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXC9P31274 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.92□□□□□ -1.62
HOXC9P31274 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXC9P31274 AP000919.1-202ENST00000581139 1264 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AC124283.4-201ENST00000581815 456 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXC9P31274 AL390816.3-201ENST00000604527 1066 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AC018618.2-201ENST00000604770 446 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AC112503.1-201ENST00000608436 391 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AL121652.1-201ENST00000608851 448 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AL512427.1-201ENST00000618593 349 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HOXC9P31274 AC013437.2-201ENST00000639587 677 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 AP000553.6-201ENST00000641242 118 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HOXC9P31274 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HOXC9P31274 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXC9P31274 MFSD8-213ENST00000641134 1327 ntBASIC4.92□□□□□ -1.62
HOXC9P31274 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXC9P31274 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXC9P31274 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXC9P31274 HSPA8P17-201ENST00000427029 1382 ntBASIC4.91□□□□□ -1.62
HOXC9P31274 AC019072.1-201ENST00000604535 1551 ntBASIC4.91□□□□□ -1.62
HOXC9P31274 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HOXC9P31274 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXC9P31274 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
HOXC9P31274 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXC9P31274 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXC9P31274 SNORD56.4-201ENST00000363883 71 ntBASIC4.91□□□□□ -1.62
HOXC9P31274 RNU6-1257P-201ENST00000384625 110 ntBASIC4.91□□□□□ -1.62
HOXC9P31274 AP002784.2-201ENST00000397300 549 ntBASIC4.91□□□□□ -1.62
HOXC9P31274 RN7SKP222-201ENST00000410651 315 ntBASIC4.91□□□□□ -1.62
HOXC9P31274 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.91□□□□□ -1.62
HOXC9P31274 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXC9P31274 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC4.91□□□□□ -1.62
HOXC9P31274 ATP5JP1-201ENST00000431631 322 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms