Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PTPN4P29074 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
PTPN4P29074 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PTPN4P29074 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PTPN4P29074 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
PTPN4P29074 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.04□□□□□ -1.76
PTPN4P29074 MTCO1P4-201ENST00000520516 1409 ntBASIC4.04□□□□□ -1.76
PTPN4P29074 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.03□□□□□ -1.76
PTPN4P29074 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PTPN4P29074 NSRP1P1-201ENST00000444067 1693 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.03□□□□□ -1.76
PTPN4P29074 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PTPN4P29074 RNA5SP27-201ENST00000363839 119 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 RNA5SP167-201ENST00000365461 116 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTPN4P29074 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTPN4P29074 SNORA48.7-201ENST00000391302 135 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTPN4P29074 AL583835.1-201ENST00000399570 407 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 DNAJC19P6-201ENST00000401853 280 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 PGBD4P8-201ENST00000412993 562 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 AC108032.1-201ENST00000416706 207 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 AL356095.1-201ENST00000417217 199 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.03□□□□□ -1.76
PTPN4P29074 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC4.03□□□□□ -1.76
PTPN4P29074 MRPL50P1-201ENST00000431951 384 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 AC009263.1-201ENST00000441193 1239 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 RPS7P5-201ENST00000441482 581 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 AL500522.2-201ENST00000448562 343 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 RPL23AP81-201ENST00000455252 467 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 RPL21P47-201ENST00000483696 477 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.03□□□□□ -1.76
PTPN4P29074 AC104108.1-201ENST00000509930 412 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 RPL7L1P13-201ENST00000511702 739 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 AC099522.1-202ENST00000514718 367 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 RNA5SP73-201ENST00000516744 108 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 RN7SKP283-201ENST00000517197 270 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PTPN4P29074 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.03□□□□□ -1.76
PTPN4P29074 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.03□□□□□ -1.76
PTPN4P29074 AC135001.1-201ENST00000544546 283 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.03□□□□□ -1.76
PTPN4P29074 AC007424.1-203ENST00000554613 687 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.03□□□□□ -1.76
PTPN4P29074 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.03□□□□□ -1.76
PTPN4P29074 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.03□□□□□ -1.76
PTPN4P29074 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.03□□□□□ -1.76
PTPN4P29074 RN7SL600P-201ENST00000581811 299 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC4.03□□□□□ -1.76
PTPN4P29074 AL354984.3-201ENST00000604803 325 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.03□□□□□ -1.76
PTPN4P29074 AC034229.5-201ENST00000624258 185 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 MIR4496-201ENST00000635896 61 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
PTPN4P29074 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.03□□□□□ -1.76
PTPN4P29074 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTPN4P29074 NMD3P1-201ENST00000439704 1488 ntBASIC4.03□□□□□ -1.76
PTPN4P29074 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTPN4P29074 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
PTPN4P29074 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PTPN4P29074 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
PTPN4P29074 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
PTPN4P29074 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.03□□□□□ -1.77
PTPN4P29074 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PTPN4P29074 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.02□□□□□ -1.77
PTPN4P29074 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PTPN4P29074 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.02□□□□□ -1.77
PTPN4P29074 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PTPN4P29074 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.02□□□□□ -1.77
PTPN4P29074 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PTPN4P29074 MIR372-201ENST00000362225 67 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 RNU1-85P-201ENST00000364127 164 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 OR6K3-202ENST00000368146 996 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
PTPN4P29074 SNORA70E-201ENST00000384492 135 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 RN7SKP182-201ENST00000410772 298 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 RN7SKP33-201ENST00000410942 340 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 AL158050.1-201ENST00000416077 457 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.02□□□□□ -1.77
PTPN4P29074 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.02□□□□□ -1.77
PTPN4P29074 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC4.02□□□□□ -1.77
PTPN4P29074 AL117339.2-201ENST00000430475 180 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.02□□□□□ -1.77
PTPN4P29074 MOB1AP2-201ENST00000446060 614 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 AC068135.1-201ENST00000446164 246 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 MTCO3P20-201ENST00000454926 688 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 HMGB3P30-201ENST00000457863 606 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 AC146507.1-201ENST00000468335 354 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.02□□□□□ -1.77
PTPN4P29074 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC4.02□□□□□ -1.77
PTPN4P29074 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.02□□□□□ -1.77
PTPN4P29074 TPT1P3-201ENST00000492841 512 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.02□□□□□ -1.77
PTPN4P29074 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.02□□□□□ -1.77
PTPN4P29074 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.02□□□□□ -1.77
PTPN4P29074 AC090071.1-201ENST00000507713 644 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.02□□□□□ -1.77
PTPN4P29074 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.02□□□□□ -1.77
PTPN4P29074 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms