Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 AC019227.1-201ENST00000526902 510 ntBASIC4.71□□□□□ -1.66
BDNFP23560 AC109635.4-202ENST00000531666 412 ntBASIC4.71□□□□□ -1.66
BDNFP23560 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.71□□□□□ -1.66
BDNFP23560 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 AC044913.1-201ENST00000557200 430 ntBASIC4.71□□□□□ -1.66
BDNFP23560 ZNF971P-201ENST00000562068 1249 ntBASIC4.71□□□□□ -1.66
BDNFP23560 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 AC068620.3-201ENST00000602749 560 ntBASIC4.71□□□□□ -1.66
BDNFP23560 AC090181.2-201ENST00000602975 672 ntBASIC4.71□□□□□ -1.66
BDNFP23560 RNF138P2-201ENST00000603490 592 ntBASIC4.71□□□□□ -1.66
BDNFP23560 AC008966.2-201ENST00000606157 453 ntBASIC4.71□□□□□ -1.66
BDNFP23560 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 MIR6891-201ENST00000618788 93 ntBASIC4.71□□□□□ -1.66
BDNFP23560 CR381572.1-201ENST00000625098 102 ntBASIC4.71□□□□□ -1.66
BDNFP23560 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
BDNFP23560 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
BDNFP23560 AC004925.1-201ENST00000624256 2706 ntBASIC4.71□□□□□ -1.66
BDNFP23560 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.71□□□□□ -1.66
BDNFP23560 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
BDNFP23560 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
BDNFP23560 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
BDNFP23560 KPNA2P2-201ENST00000419546 1489 ntBASIC4.7□□□□□ -1.66
BDNFP23560 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
BDNFP23560 OR5P1P-201ENST00000299512 925 ntBASIC4.7□□□□□ -1.66
BDNFP23560 RNU6-251P-201ENST00000363235 104 ntBASIC4.7□□□□□ -1.66
BDNFP23560 CRYBB2P1-203ENST00000415709 538 ntBASIC4.7□□□□□ -1.66
BDNFP23560 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC4.7□□□□□ -1.66
BDNFP23560 AL139095.3-201ENST00000419672 1203 ntBASIC4.7□□□□□ -1.66
BDNFP23560 RPL21P66-201ENST00000426566 466 ntBASIC4.7□□□□□ -1.66
BDNFP23560 MTCYBP32-201ENST00000427945 1084 ntBASIC4.7□□□□□ -1.66
BDNFP23560 AC011242.1-201ENST00000433596 1158 ntBASIC4.7□□□□□ -1.66
BDNFP23560 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.7□□□□□ -1.66
BDNFP23560 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.7□□□□□ -1.66
BDNFP23560 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.7□□□□□ -1.66
BDNFP23560 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.7□□□□□ -1.66
BDNFP23560 RN7SL98P-201ENST00000462271 300 ntBASIC4.7□□□□□ -1.66
BDNFP23560 AC108751.2-201ENST00000469993 231 ntBASIC4.7□□□□□ -1.66
BDNFP23560 VN1R17P-201ENST00000472048 1090 ntBASIC4.7□□□□□ -1.66
BDNFP23560 AC015908.1-201ENST00000478739 476 ntBASIC4.7□□□□□ -1.66
BDNFP23560 RPS4XP13-201ENST00000483219 789 ntBASIC4.7□□□□□ -1.66
BDNFP23560 RN7SL810P-201ENST00000493031 276 ntBASIC4.7□□□□□ -1.66
BDNFP23560 RPS4XP18-201ENST00000495480 763 ntBASIC4.7□□□□□ -1.66
BDNFP23560 AC068305.1-201ENST00000497406 726 ntBASIC4.7□□□□□ -1.66
BDNFP23560 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC4.7□□□□□ -1.66
BDNFP23560 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
BDNFP23560 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.7□□□□□ -1.66
BDNFP23560 RNU6-885P-201ENST00000516607 104 ntBASIC4.7□□□□□ -1.66
BDNFP23560 AP003066.2-201ENST00000529375 555 ntBASIC4.7□□□□□ -1.66
BDNFP23560 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.7□□□□□ -1.66
BDNFP23560 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
BDNFP23560 SULT1C2P1-202ENST00000562418 459 ntBASIC4.7□□□□□ -1.66
BDNFP23560 SNORD84-203ENST00000584275 78 ntBASIC4.7□□□□□ -1.66
BDNFP23560 SNORD39.3-201ENST00000584451 71 ntBASIC4.7□□□□□ -1.66
BDNFP23560 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.7□□□□□ -1.66
BDNFP23560 AC025946.2-201ENST00000603398 234 ntBASIC4.7□□□□□ -1.66
BDNFP23560 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.7□□□□□ -1.66
BDNFP23560 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.7□□□□□ -1.66
BDNFP23560 AL590282.1-201ENST00000610379 1136 ntBASIC4.7□□□□□ -1.66
BDNFP23560 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
BDNFP23560 AL138955.1-201ENST00000622881 1040 ntBASIC4.7□□□□□ -1.66
BDNFP23560 AC006963.1-201ENST00000624003 1052 ntBASIC4.7□□□□□ -1.66
BDNFP23560 AC087821.2-201ENST00000637086 450 ntBASIC4.7□□□□□ -1.66
BDNFP23560 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC4.7□□□□□ -1.66
BDNFP23560 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.7□□□□□ -1.66
BDNFP23560 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.7□□□□□ -1.66
BDNFP23560 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
BDNFP23560 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.7□□□□□ -1.66
BDNFP23560 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.7□□□□□ -1.66
BDNFP23560 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
BDNFP23560 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
BDNFP23560 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
BDNFP23560 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.7□□□□□ -1.66
BDNFP23560 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.7□□□□□ -1.66
BDNFP23560 AC015813.6-201ENST00000624409 5808 ntBASIC4.7□□□□□ -1.66
BDNFP23560 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
BDNFP23560 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
BDNFP23560 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
BDNFP23560 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
BDNFP23560 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.69□□□□□ -1.66
BDNFP23560 AC005261.4-201ENST00000600047 1385 ntBASIC4.69□□□□□ -1.66
BDNFP23560 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
BDNFP23560 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
BDNFP23560 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.69□□□□□ -1.66
BDNFP23560 MIR331-201ENST00000362302 94 ntBASIC4.69□□□□□ -1.66
BDNFP23560 RNA5SP151-201ENST00000365632 117 ntBASIC4.69□□□□□ -1.66
BDNFP23560 AC068538.1-201ENST00000376856 336 ntBASIC4.69□□□□□ -1.66
BDNFP23560 RNU1-63P-201ENST00000383902 164 ntBASIC4.69□□□□□ -1.66
BDNFP23560 RNU6-821P-201ENST00000390995 107 ntBASIC4.69□□□□□ -1.66
BDNFP23560 RNU6-575P-201ENST00000411326 105 ntBASIC4.69□□□□□ -1.66
BDNFP23560 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.69□□□□□ -1.66
BDNFP23560 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC4.69□□□□□ -1.66
BDNFP23560 ZNF736P7Y-201ENST00000425158 820 ntBASIC4.69□□□□□ -1.66
BDNFP23560 VDAC1P6-201ENST00000430062 855 ntBASIC4.69□□□□□ -1.66
BDNFP23560 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms