Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC4P09017 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.69□□□□□ -1.82
HOXC4P09017 AC020914.6-201ENST00000594327 272 ntBASIC3.69□□□□□ -1.82
HOXC4P09017 BNIP3P39-201ENST00000601077 554 ntBASIC3.69□□□□□ -1.82
HOXC4P09017 AC022387.2-201ENST00000604050 448 ntBASIC3.69□□□□□ -1.82
HOXC4P09017 AC105148.1-201ENST00000604961 409 ntBASIC3.69□□□□□ -1.82
HOXC4P09017 AC084036.1-201ENST00000609190 508 ntBASIC3.69□□□□□ -1.82
HOXC4P09017 AC245389.2-201ENST00000616023 576 ntBASIC3.69□□□□□ -1.82
HOXC4P09017 AC242843.1-201ENST00000618702 573 ntBASIC3.69□□□□□ -1.82
HOXC4P09017 AC079684.1-201ENST00000621405 437 ntBASIC3.69□□□□□ -1.82
HOXC4P09017 AC007342.8-201ENST00000623278 678 ntBASIC3.69□□□□□ -1.82
HOXC4P09017 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC4P09017 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC4P09017 EXOC5P1-201ENST00000510543 1969 ntBASIC3.69□□□□□ -1.82
HOXC4P09017 BDP1P-201ENST00000582658 1990 ntBASIC3.69□□□□□ -1.82
HOXC4P09017 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC4P09017 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC4P09017 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC4P09017 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXC4P09017 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC4P09017 MTND4P21-201ENST00000453886 1357 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC4P09017 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC4P09017 RNA5SP119-201ENST00000362715 117 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC4P09017 RNU1-89P-201ENST00000384592 164 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 RNA5SP171-201ENST00000391071 115 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 ATP5A1P2-201ENST00000412323 255 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC4P09017 AL138785.1-201ENST00000425821 331 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXC4P09017 ZFAND6P1-201ENST00000434138 605 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC4P09017 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXC4P09017 RPS3AP46-201ENST00000448352 682 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 PDSS1P2-201ENST00000449397 678 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC4P09017 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXC4P09017 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC4P09017 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXC4P09017 AC018635.1-201ENST00000468292 1030 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 AC106707.2-201ENST00000484182 374 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXC4P09017 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC4P09017 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC4P09017 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXC4P09017 RN7SKP157-201ENST00000516174 282 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 SNORA70.14-201ENST00000516205 110 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 RANP9-201ENST00000519957 271 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXC4P09017 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXC4P09017 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXC4P09017 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXC4P09017 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXC4P09017 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXC4P09017 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXC4P09017 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXC4P09017 AC053481.3-201ENST00000577881 843 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXC4P09017 MIR4512-201ENST00000583257 77 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 MIR92B-201ENST00000607575 96 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 AC016542.1-201ENST00000608259 493 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 AL034408.1-202ENST00000636088 415 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 AC119674.1-220ENST00000641502 1048 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 AC009093.8-201ENST00000641769 292 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC4P09017 AL049781.1-201ENST00000623195 3585 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
HOXC4P09017 ZNF962P-201ENST00000443465 3140 ntBASIC3.68□□□□□ -1.82
HOXC4P09017 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC4P09017 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
HOXC4P09017 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC4P09017 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 RNA5SP51-201ENST00000364750 119 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC4P09017 RNU6-1176P-201ENST00000390955 107 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXC4P09017 SOD2P1-201ENST00000396543 562 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC4P09017 RPL7P53-201ENST00000421245 739 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 HSFY1P1-201ENST00000423928 1178 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC4P09017 RPL6P5-201ENST00000445678 828 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 AL358232.1-201ENST00000448030 501 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 MTND2P25-201ENST00000449028 610 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 SNRPGP5-201ENST00000456003 220 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC4P09017 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
HOXC4P09017 RN7SKP18-201ENST00000516005 275 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 RNA5SP143-201ENST00000516936 115 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC4P09017 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC4P09017 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXC4P09017 AL121766.1-201ENST00000547436 487 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXC4P09017 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.67□□□□□ -1.82
HOXC4P09017 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.67□□□□□ -1.82
HOXC4P09017 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXC4P09017 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXC4P09017 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms