Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS4AQ9UN37 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS4AQ9UN37 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
VPS4AQ9UN37 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.64■□□□□ 0.58
VPS4AQ9UN37 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS4AQ9UN37 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS4AQ9UN37 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.64■□□□□ 0.58
VPS4AQ9UN37 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS4AQ9UN37 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS4AQ9UN37 AC120498.9-201ENST00000339021 3867 ntBASIC18.64■□□□□ 0.57
VPS4AQ9UN37 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS4AQ9UN37 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 AP000974.1-201ENST00000623909 2387 ntBASIC18.63■□□□□ 0.57
VPS4AQ9UN37 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS4AQ9UN37 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 AC239809.2-201ENST00000415381 517 ntBASIC18.62■□□□□ 0.57
VPS4AQ9UN37 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 Z82202.1-201ENST00000623446 1880 ntBASIC18.62■□□□□ 0.57
VPS4AQ9UN37 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4AQ9UN37 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4AQ9UN37 RCN1P1-201ENST00000400413 996 ntBASIC18.61■□□□□ 0.57
VPS4AQ9UN37 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms