Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC42Q96M95 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC42Q96M95 MIR4458-201ENST00000578872 75 ntBASIC3.73□□□□□ -1.81
CCDC42Q96M95 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.73□□□□□ -1.81
CCDC42Q96M95 U4.6-201ENST00000621618 127 ntBASIC3.73□□□□□ -1.81
CCDC42Q96M95 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC42Q96M95 AC119674.1-207ENST00000641355 633 ntBASIC3.73□□□□□ -1.81
CCDC42Q96M95 AC090337.1-201ENST00000579651 2074 ntBASIC3.73□□□□□ -1.81
CCDC42Q96M95 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC42Q96M95 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC42Q96M95 AC032011.1-201ENST00000611703 1549 ntBASIC3.73□□□□□ -1.81
CCDC42Q96M95 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
CCDC42Q96M95 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC42Q96M95 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC42Q96M95 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC42Q96M95 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
CCDC42Q96M95 AC007823.1-201ENST00000569932 1566 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
CCDC42Q96M95 SYT14P1-202ENST00000600441 1448 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC42Q96M95 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC42Q96M95 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
CCDC42Q96M95 RPS7P13-201ENST00000413955 498 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 TCEA1P4-201ENST00000415066 844 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 AC017079.2-201ENST00000416102 485 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC42Q96M95 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC42Q96M95 AL353093.1-201ENST00000441292 436 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 RAB28P3-201ENST00000448325 597 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 AC097262.1-201ENST00000452559 548 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 HMGN1P18-201ENST00000457642 277 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 TRBV8-2-201ENST00000475637 270 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.72□□□□□ -1.81
CCDC42Q96M95 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.72□□□□□ -1.81
CCDC42Q96M95 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC42Q96M95 HSPE1P5-201ENST00000561489 272 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 RN7SL703P-201ENST00000578485 302 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 MIR5685-201ENST00000579080 79 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 AC008507.1-201ENST00000587506 734 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 AF230666.2-201ENST00000602328 725 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC42Q96M95 AC123768.4-201ENST00000616244 701 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC42Q96M95 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.72□□□□□ -1.81
CCDC42Q96M95 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC42Q96M95 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC42Q96M95 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC42Q96M95 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC42Q96M95 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC3.71□□□□□ -1.81
CCDC42Q96M95 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC42Q96M95 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC42Q96M95 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
CCDC42Q96M95 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC42Q96M95 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC42Q96M95 SNORD9-201ENST00000362566 104 ntBASIC3.71□□□□□ -1.82
CCDC42Q96M95 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.71□□□□□ -1.82
CCDC42Q96M95 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.71□□□□□ -1.82
CCDC42Q96M95 AC126124.2-201ENST00000413542 321 ntBASIC3.71□□□□□ -1.82
CCDC42Q96M95 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC42Q96M95 AC007390.1-201ENST00000415722 356 ntBASIC3.71□□□□□ -1.82
CCDC42Q96M95 AL356968.1-201ENST00000416622 474 ntBASIC3.71□□□□□ -1.82
CCDC42Q96M95 RPS15AP6-201ENST00000420703 385 ntBASIC3.71□□□□□ -1.82
CCDC42Q96M95 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.71□□□□□ -1.82
CCDC42Q96M95 AC008264.1-201ENST00000447612 367 ntBASIC3.71□□□□□ -1.82
CCDC42Q96M95 AL035404.1-201ENST00000497982 568 ntBASIC3.71□□□□□ -1.82
CCDC42Q96M95 UBE2CP3-201ENST00000502715 450 ntBASIC3.71□□□□□ -1.82
CCDC42Q96M95 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC42Q96M95 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.71□□□□□ -1.82
CCDC42Q96M95 AL845331.3-202ENST00000562856 261 ntBASIC3.71□□□□□ -1.82
CCDC42Q96M95 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC42Q96M95 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC42Q96M95 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC42Q96M95 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC42Q96M95 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
CCDC42Q96M95 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC42Q96M95 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC42Q96M95 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 RNA5SP51-201ENST00000364750 119 ntBASIC3.7□□□□□ -1.82
CCDC42Q96M95 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC42Q96M95 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC42Q96M95 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC42Q96M95 DBIP2-201ENST00000419076 262 ntBASIC3.7□□□□□ -1.82
CCDC42Q96M95 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 MTCYBP31-201ENST00000438855 1122 ntBASIC3.7□□□□□ -1.82
CCDC42Q96M95 RPS29P7-201ENST00000439662 171 ntBASIC3.7□□□□□ -1.82
CCDC42Q96M95 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 HMGN1P11-201ENST00000508668 303 ntBASIC3.7□□□□□ -1.82
CCDC42Q96M95 PHBP14-201ENST00000512887 367 ntBASIC3.7□□□□□ -1.82
CCDC42Q96M95 SNORA70.18-201ENST00000516696 98 ntBASIC3.7□□□□□ -1.82
CCDC42Q96M95 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC42Q96M95 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.7□□□□□ -1.82
CCDC42Q96M95 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms