Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC027088.4-201ENST00000611559 1947 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 Y_RNA.216-201ENST00000364205 93 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 RN7SKP275-201ENST00000364626 301 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 RNU6-1160P-201ENST00000384546 104 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 MIR649-201ENST00000384843 97 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC004386.1-201ENST00000393214 761 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 EIF5P1-201ENST00000400019 1231 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AL023807.1-201ENST00000407932 359 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AL356276.2-201ENST00000435919 558 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AL590399.4-201ENST00000436561 601 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 SLC25A18P1-201ENST00000449385 454 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC078785.3-201ENST00000476607 425 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 RPS3AP50-201ENST00000487064 803 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC025458.1-201ENST00000506046 166 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 RNU6-1314P-201ENST00000517139 104 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 IGKV2-19-201ENST00000518132 283 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 IGLV3-30-201ENST00000524362 298 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 OR5BN1P-201ENST00000532955 829 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 LSM6P2-201ENST00000552208 177 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC006115.2-201ENST00000596823 202 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC138305.3-201ENST00000624988 240 ntBASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
UBE3DQ7Z6J8 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
UBE3DQ7Z6J8 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
UBE3DQ7Z6J8 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
UBE3DQ7Z6J8 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.59□□□□□ -1.52
UBE3DQ7Z6J8 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
UBE3DQ7Z6J8 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
UBE3DQ7Z6J8 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 MTND5P3-201ENST00000438536 1800 ntBASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 Y_RNA.100-201ENST00000363141 102 ntBASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 RNA5SP433-201ENST00000364491 114 ntBASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 SNORA63C-201ENST00000364578 129 ntBASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 RNU6-343P-201ENST00000364709 104 ntBASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 SNORA51.6-201ENST00000384151 125 ntBASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 AC016739.1-201ENST00000405359 345 ntBASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 MTCYBP8-201ENST00000422855 651 ntBASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.58□□□□□ -1.52
UBE3DQ7Z6J8 AC024082.2-201ENST00000434771 238 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 286 ms