Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU4-12P-201ENST00000365233 139 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
USP39Q53GS9 RNU1-74P-201ENST00000384108 171 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 AL136131.1-201ENST00000406079 803 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.22□□□□□ -1.57
USP39Q53GS9 RNU2-50P-201ENST00000410494 143 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.22□□□□□ -1.57
USP39Q53GS9 GLRXP1-201ENST00000423261 334 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 MTCO1P3-201ENST00000429327 192 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC5.22□□□□□ -1.57
USP39Q53GS9 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USP39Q53GS9 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC5.22□□□□□ -1.57
USP39Q53GS9 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC5.22□□□□□ -1.57
USP39Q53GS9 MTCO2P25-201ENST00000447065 681 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC5.22□□□□□ -1.57
USP39Q53GS9 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USP39Q53GS9 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AC146507.1-201ENST00000468335 354 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 AP000797.2-201ENST00000475768 606 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 MTND6P6-201ENST00000478031 263 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 AC092989.1-201ENST00000481235 277 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 RPL9P6-201ENST00000492764 598 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC5.22□□□□□ -1.57
USP39Q53GS9 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.22□□□□□ -1.57
USP39Q53GS9 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.22□□□□□ -1.57
USP39Q53GS9 OR5AK3P-201ENST00000527486 1297 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 AP005639.2-201ENST00000527592 928 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AC009117.1-201ENST00000563948 554 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 MIR4691-201ENST00000583764 85 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AC044792.1-201ENST00000593294 196 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.22□□□□□ -1.57
USP39Q53GS9 AL359697.1-201ENST00000624879 587 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC5.22□□□□□ -1.57
USP39Q53GS9 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USP39Q53GS9 AC092376.2-201ENST00000622621 4116 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USP39Q53GS9 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
USP39Q53GS9 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.22□□□□□ -1.57
USP39Q53GS9 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.22□□□□□ -1.57
USP39Q53GS9 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
USP39Q53GS9 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
USP39Q53GS9 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
USP39Q53GS9 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.57
USP39Q53GS9 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.57
USP39Q53GS9 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
USP39Q53GS9 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
USP39Q53GS9 BTBD10P1-201ENST00000549824 1352 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.21□□□□□ -1.58
USP39Q53GS9 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.21□□□□□ -1.58
USP39Q53GS9 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
USP39Q53GS9 AC008079.2-201ENST00000623543 20396 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
USP39Q53GS9 OR9G4-201ENST00000302957 984 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 Y_RNA.18-201ENST00000362461 102 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 RNU4-7P-201ENST00000364758 141 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 RNA5SP90-201ENST00000364801 99 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
USP39Q53GS9 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
USP39Q53GS9 Y_RNA.582-201ENST00000391023 95 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 CIR1P3-201ENST00000405137 479 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 HMGB3P18-201ENST00000406327 590 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 RNU6-575P-201ENST00000411326 105 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 NPM1P40-201ENST00000412758 733 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.21□□□□□ -1.58
USP39Q53GS9 RPL23AP39-201ENST00000415533 405 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 MTCYBP24-201ENST00000420387 1106 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 EI24P4-201ENST00000423683 1078 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AC012498.1-201ENST00000424037 437 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC5.21□□□□□ -1.58
USP39Q53GS9 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.21□□□□□ -1.58
USP39Q53GS9 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.21□□□□□ -1.58
USP39Q53GS9 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.21□□□□□ -1.58
USP39Q53GS9 USP9YP8-201ENST00000441913 500 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AC097499.1-201ENST00000444277 208 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.21□□□□□ -1.58
USP39Q53GS9 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.21□□□□□ -1.58
USP39Q53GS9 KLF3P2-201ENST00000465138 268 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 RPL5P22-201ENST00000480199 884 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC5.21□□□□□ -1.58
USP39Q53GS9 AC008897.1-201ENST00000494006 347 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AC069439.1-201ENST00000494739 167 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC5.21□□□□□ -1.58
USP39Q53GS9 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC5.21□□□□□ -1.58
USP39Q53GS9 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC5.21□□□□□ -1.58
USP39Q53GS9 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
USP39Q53GS9 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC5.21□□□□□ -1.58
USP39Q53GS9 IGBP1P5-201ENST00000507524 1000 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 ARL2BPP6-201ENST00000512757 439 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 RFPL4AP5-201ENST00000514977 504 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 RN7SKP298-201ENST00000515950 94 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms