Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 MTND4P5-201ENST00000435821 1374 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC009229.4-201ENST00000623854 1947 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 RNU4-21P-201ENST00000362802 126 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 RNU6-444P-201ENST00000383988 108 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 Y_RNA.553-201ENST00000384670 102 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 Y_RNA.625-201ENST00000411256 107 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC073264.1-201ENST00000411508 416 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 TPMTP3-201ENST00000411928 735 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 RPL7P8-201ENST00000411964 730 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 TBCAP2-201ENST00000416175 326 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC099336.2-201ENST00000422457 254 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AL049610.1-201ENST00000423374 372 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AL138878.2-201ENST00000440581 1241 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AL589765.3-201ENST00000446084 462 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC000111.2-201ENST00000448200 210 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC099560.2-201ENST00000457554 255 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC116337.2-201ENST00000477662 156 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 SNX5P1-201ENST00000505757 1041 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 OR7H2P-201ENST00000513483 306 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 RNU6-583P-201ENST00000516012 92 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 RNY4P37-201ENST00000516225 96 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 CYCSP40-201ENST00000575927 294 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC012213.3-201ENST00000577199 777 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC008507.1-201ENST00000587506 734 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AL596327.1-201ENST00000603629 213 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC087283.1-201ENST00000604029 1074 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC018816.2-201ENST00000621460 353 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC092656.1-203ENST00000624134 423 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 AC008758.3-201ENST00000507003 1829 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 NEAT1-202ENST00000501122 22743 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 XPOTP1-201ENST00000443317 2398 ntBASIC4.76□□□□□ -1.65
PTCHD3Q3KNS1 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AP000756.2-201ENST00000624168 2567 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 STX3-208ENST00000641815 3236 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC005332.5-201ENST00000591222 2919 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC016716.1-201ENST00000265882 708 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 Y_RNA.302-201ENST00000364997 102 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 RPL23AP29-201ENST00000397284 453 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AL078604.1-201ENST00000404609 466 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AL450338.1-201ENST00000407987 512 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 MTCO3P41-201ENST00000414801 328 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 TMBIM7P-201ENST00000418074 855 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms