Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RPL9P33-201ENST00000484311 566 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC096751.1-202ENST00000502691 1067 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.01□□□□□ -1.77
HOXD3P31249 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 ARL2BPP4-201ENST00000506854 471 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXD3P31249 CDC42P4-201ENST00000510507 563 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXD3P31249 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXD3P31249 AC006427.1-201ENST00000514359 712 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.01□□□□□ -1.77
HOXD3P31249 OR4A45P-201ENST00000529954 901 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXD3P31249 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.01□□□□□ -1.77
HOXD3P31249 NMNAT1P1-201ENST00000554095 876 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.01□□□□□ -1.77
HOXD3P31249 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXD3P31249 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXD3P31249 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXD3P31249 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXD3P31249 AP003465.2-201ENST00000602571 373 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC008814.1-201ENST00000603797 406 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC091805.2-201ENST00000603848 235 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC103710.4-201ENST00000609301 899 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC087241.4-201ENST00000612441 480 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC092794.1-201ENST00000612734 582 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC027807.2-201ENST00000616099 408 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC116165.2-201ENST00000616705 206 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AP000648.2-201ENST00000624182 404 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXD3P31249 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
HOXD3P31249 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HOXD3P31249 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.01□□□□□ -1.77
HOXD3P31249 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC4.01□□□□□ -1.77
HOXD3P31249 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HOXD3P31249 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
HOXD3P31249 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 DDX18P3-201ENST00000404856 2007 ntBASIC4□□□□□ -1.77
HOXD3P31249 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4□□□□□ -1.77
HOXD3P31249 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 OFD1P5Y-201ENST00000447585 2590 ntBASIC4□□□□□ -1.77
HOXD3P31249 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4□□□□□ -1.77
HOXD3P31249 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4□□□□□ -1.77
HOXD3P31249 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 FGF7P2-201ENST00000332473 296 ntBASIC4□□□□□ -1.77
HOXD3P31249 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 RN7SKP104-201ENST00000362605 328 ntBASIC4□□□□□ -1.77
HOXD3P31249 RNU5F-7P-201ENST00000363696 115 ntBASIC4□□□□□ -1.77
HOXD3P31249 RNA5SP90-201ENST00000364801 99 ntBASIC4□□□□□ -1.77
HOXD3P31249 RNA5SP455-201ENST00000365190 119 ntBASIC4□□□□□ -1.77
HOXD3P31249 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4□□□□□ -1.77
HOXD3P31249 RNU2-28P-201ENST00000410457 189 ntBASIC4□□□□□ -1.77
HOXD3P31249 AC016397.1-201ENST00000412463 242 ntBASIC4□□□□□ -1.77
HOXD3P31249 RPS7P13-201ENST00000413955 498 ntBASIC4□□□□□ -1.77
HOXD3P31249 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4□□□□□ -1.77
HOXD3P31249 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 NPM1P24-201ENST00000428039 894 ntBASIC4□□□□□ -1.77
HOXD3P31249 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC4□□□□□ -1.77
HOXD3P31249 ZYG11AP1-201ENST00000430329 837 ntBASIC4□□□□□ -1.77
HOXD3P31249 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC4□□□□□ -1.77
HOXD3P31249 UBE2FP3-201ENST00000436366 524 ntBASIC4□□□□□ -1.77
HOXD3P31249 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4□□□□□ -1.77
HOXD3P31249 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC4□□□□□ -1.77
HOXD3P31249 CEACAMP9-201ENST00000442990 513 ntBASIC4□□□□□ -1.77
HOXD3P31249 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4□□□□□ -1.77
HOXD3P31249 AL592447.1-201ENST00000447592 540 ntBASIC4□□□□□ -1.77
HOXD3P31249 AC108463.1-201ENST00000450258 347 ntBASIC4□□□□□ -1.77
HOXD3P31249 RPL26P28-201ENST00000451325 435 ntBASIC4□□□□□ -1.77
HOXD3P31249 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 AC093899.1-201ENST00000457984 376 ntBASIC4□□□□□ -1.77
HOXD3P31249 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4□□□□□ -1.77
HOXD3P31249 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4□□□□□ -1.77
HOXD3P31249 MTND2P33-201ENST00000506452 1031 ntBASIC4□□□□□ -1.77
HOXD3P31249 RPL37P25-201ENST00000507308 276 ntBASIC4□□□□□ -1.77
HOXD3P31249 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4□□□□□ -1.77
HOXD3P31249 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms