Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MTCYBP41-201ENST00000528913 1123 ntBASIC5.23□□□□□ -1.57
COL3A1P02461 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC5.23□□□□□ -1.57
COL3A1P02461 DUXAP6-201ENST00000553858 601 ntBASIC5.23□□□□□ -1.57
COL3A1P02461 BNIP3P30-201ENST00000601184 574 ntBASIC5.23□□□□□ -1.57
COL3A1P02461 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.23□□□□□ -1.57
COL3A1P02461 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC5.23□□□□□ -1.57
COL3A1P02461 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC5.23□□□□□ -1.57
COL3A1P02461 AC055839.1-201ENST00000634467 498 ntBASIC5.23□□□□□ -1.57
COL3A1P02461 AC012442.3-202ENST00000636742 206 ntBASIC5.23□□□□□ -1.57
COL3A1P02461 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL3A1P02461 AC097504.1-201ENST00000515103 2415 ntBASIC5.23□□□□□ -1.57
COL3A1P02461 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
COL3A1P02461 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
COL3A1P02461 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC5.22□□□□□ -1.57
COL3A1P02461 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL3A1P02461 RNU6-1214P-201ENST00000363650 109 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL3A1P02461 RNU5A-2P-201ENST00000384337 116 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 SNORA3C-201ENST00000408792 125 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 RNA5SP306-201ENST00000411087 107 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 AF274854.1-201ENST00000413236 615 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 TCEA1P4-201ENST00000415066 844 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC5.22□□□□□ -1.57
COL3A1P02461 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.22□□□□□ -1.57
COL3A1P02461 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL3A1P02461 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC5.22□□□□□ -1.57
COL3A1P02461 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.22□□□□□ -1.57
COL3A1P02461 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC5.22□□□□□ -1.57
COL3A1P02461 XKRY2-201ENST00000442362 1093 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 NPM1P13-201ENST00000452663 865 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC5.22□□□□□ -1.57
COL3A1P02461 RPL21P6-201ENST00000479171 504 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 NPM1P29-201ENST00000483112 803 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 OR9N1P-201ENST00000491296 333 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC5.22□□□□□ -1.57
COL3A1P02461 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.22□□□□□ -1.57
COL3A1P02461 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC5.22□□□□□ -1.57
COL3A1P02461 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.22□□□□□ -1.57
COL3A1P02461 NPM1P47-201ENST00000560843 856 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5.22□□□□□ -1.57
COL3A1P02461 AC010546.1-201ENST00000569391 485 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC5.22□□□□□ -1.57
COL3A1P02461 AC012603.1-201ENST00000606424 528 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 AL513477.2-201ENST00000607858 568 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 AC093673.2-201ENST00000609674 331 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 AL360219.1-201ENST00000610230 366 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 AK6-205ENST00000618980 483 ntTSL 2 BASIC5.22□□□□□ -1.57
COL3A1P02461 AL354798.1-201ENST00000622505 329 ntBASIC5.22□□□□□ -1.57
COL3A1P02461 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC5.22□□□□□ -1.57
COL3A1P02461 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL3A1P02461 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL3A1P02461 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL3A1P02461 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL3A1P02461 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL3A1P02461 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC5.22□□□□□ -1.57
COL3A1P02461 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.22□□□□□ -1.57
COL3A1P02461 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC5.21□□□□□ -1.58
COL3A1P02461 Y_RNA.62-201ENST00000362840 99 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 ATP5F1P3-201ENST00000397213 657 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL3A1P02461 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC5.21□□□□□ -1.58
COL3A1P02461 MTND4LP20-201ENST00000402379 270 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC5.21□□□□□ -1.58
COL3A1P02461 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.21□□□□□ -1.58
COL3A1P02461 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.21□□□□□ -1.58
COL3A1P02461 DLGAP5P1-201ENST00000430307 464 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 AL392003.1-201ENST00000434394 243 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC5.21□□□□□ -1.58
COL3A1P02461 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC5.21□□□□□ -1.58
COL3A1P02461 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC5.21□□□□□ -1.58
COL3A1P02461 MTCO2P18-201ENST00000457151 658 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 AC022795.1-201ENST00000473808 480 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC5.21□□□□□ -1.58
COL3A1P02461 SETP6-201ENST00000479329 568 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 AC108734.3-201ENST00000481241 1165 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 OR9N1P-202ENST00000494289 481 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 FTH1P11-201ENST00000517577 551 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 HNRNPCP4-201ENST00000571636 900 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC5.21□□□□□ -1.58
COL3A1P02461 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC5.21□□□□□ -1.58
COL3A1P02461 AC073387.2-201ENST00000604797 784 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 AC016727.1-205ENST00000605437 569 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 AC069234.5-201ENST00000611056 416 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC5.21□□□□□ -1.58
COL3A1P02461 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL3A1P02461 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL3A1P02461 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL3A1P02461 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL3A1P02461 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC5.21□□□□□ -1.58
COL3A1P02461 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL3A1P02461 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
COL3A1P02461 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.58
COL3A1P02461 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL3A1P02461 SUCLA2P2-201ENST00000417269 1309 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 AC104454.1-201ENST00000421341 1401 ntBASIC5.21□□□□□ -1.58
COL3A1P02461 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
COL3A1P02461 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL3A1P02461 RNU6-354P-201ENST00000383862 107 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 RNU6-610P-201ENST00000384264 107 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms