Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 NDUFA5P2-201ENST00000519723 344 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 IGKV2D-10-201ENST00000520194 281 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC087808.1-201ENST00000520501 361 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC060788.1-201ENST00000521318 469 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 TOMM20P2-201ENST00000540082 421 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC007954.1-201ENST00000554198 494 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AGGF1P4-201ENST00000568249 801 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 HNRNPCP4-201ENST00000571636 900 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC087783.2-201ENST00000605070 562 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 FAM25E-202ENST00000608562 189 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AL049794.2-201ENST00000616301 365 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 RN7SL722P-201ENST00000617780 284 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 RN7SL565P-201ENST00000618246 284 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 AF001550.2-201ENST00000636643 217 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 MTND5P24-201ENST00000438892 1767 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 IRF5P1-201ENST00000504852 2164 ntBASIC4.98□□□□□ -1.61
DKK3Q9UBP4 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
DKK3Q9UBP4 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 SNORA73.1-201ENST00000363107 205 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 RNU4-75P-201ENST00000364621 146 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 SNORA62.2-201ENST00000364672 152 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 CYB5AP4-201ENST00000396692 399 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 RPS16P5-201ENST00000406501 404 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 RPL23AP48-201ENST00000406913 488 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 RNU6-920P-201ENST00000410926 92 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 SLC25A18P1-201ENST00000449385 454 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AL121877.1-201ENST00000453704 622 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 FGF7P3-201ENST00000454645 303 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 RNU6-1218P-201ENST00000458990 108 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AC021660.1-201ENST00000465006 554 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 TRBV8-2-201ENST00000475637 270 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 ACTG1P13-201ENST00000486987 1043 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AF213884.2-201ENST00000510417 903 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AC092851.1-201ENST00000535964 478 ntBASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.97□□□□□ -1.61
DKK3Q9UBP4 AC079075.1-201ENST00000559543 878 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms