Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 NANOGP10-201ENST00000453325 895 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 MTCO3P20-201ENST00000454926 688 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 DNAJC19P1-201ENST00000455312 319 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 AC007967.1-201ENST00000455422 1159 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 U8.18-201ENST00000459285 133 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 RN7SL542P-201ENST00000467147 294 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 PCBP2P3-201ENST00000509726 843 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 AC023632.4-201ENST00000517783 191 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 MIR4512-201ENST00000583257 77 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 AL713998.2-201ENST00000604538 1198 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 AL162574.2-201ENST00000614618 657 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 C2orf27A-204ENST00000623058 969 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 AC103798.2-201ENST00000624292 632 ntBASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
RSPO3Q9BXY4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 RNU6-670P-201ENST00000364312 104 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 RNU6-304P-201ENST00000364855 107 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 SNORA70.4-201ENST00000365509 134 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 MIR200C-201ENST00000384980 68 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC073464.3-201ENST00000422564 712 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AL390879.2-203ENST00000426943 1121 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AL591419.1-201ENST00000427423 339 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC009263.1-201ENST00000441193 1239 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 ANP32BP2-201ENST00000454525 545 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 RNU6-1218P-201ENST00000458990 108 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AL133162.1-201ENST00000463228 453 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC010460.1-201ENST00000507087 466 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 SNORA70.14-201ENST00000516205 110 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 RNU6-347P-201ENST00000516658 105 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC025423.2-201ENST00000537570 439 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AL109741.3-201ENST00000561748 592 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 MIR4458-201ENST00000578872 75 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 VN1R81P-201ENST00000602085 372 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AL096803.3-201ENST00000609032 532 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC016957.2-201ENST00000616998 848 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 AC004943.3-201ENST00000624116 600 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 RPS4XP5-202ENST00000449995 1334 ntBASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.37□□□□□ -1.87
RSPO3Q9BXY4 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 AC066616.2-201ENST00000559334 1481 ntBASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 SNORA11.1-201ENST00000408133 129 ntBASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 RNU6-564P-201ENST00000410983 104 ntBASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 RHEBP3-201ENST00000411920 351 ntBASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 AC127526.1-201ENST00000417526 366 ntBASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 TCEA1P2-201ENST00000420496 906 ntBASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 AC245054.1-201ENST00000420944 258 ntBASIC3.36□□□□□ -1.87
RSPO3Q9BXY4 RPL23AP4-201ENST00000427757 463 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms