Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 FKBP1AP1-201ENST00000594588 318 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 Z99129.2-201ENST00000619967 314 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC073530.2-201ENST00000623987 261 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AP000676.4-201ENST00000624659 623 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AL355480.4-201ENST00000626823 69 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AL139254.3-201ENST00000641097 674 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 SNORA62-201ENST00000365493 153 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 CHMP1B2P-201ENST00000399581 597 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 ZNF602P-201ENST00000405929 924 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 RPL35AP24-201ENST00000413846 330 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 CRYBB2P1-203ENST00000415709 538 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 HMGB1P45-201ENST00000435986 653 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AL645931.1-201ENST00000439737 410 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 RPL12P3-201ENST00000440080 396 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 TRY2P-201ENST00000448860 689 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AL136126.1-201ENST00000473603 402 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC022695.1-201ENST00000522089 237 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC005363.1-201ENST00000530779 351 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC107016.2-201ENST00000547968 190 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 PSMB7P1-201ENST00000556349 514 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC008782.1-201ENST00000603386 430 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 DUXAP3-201ENST00000603616 594 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC115286.1-201ENST00000604298 434 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC105429.2-201ENST00000610567 517 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 AC012409.3-201ENST00000611343 981 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 PDCD6IPP1-202ENST00000622242 1064 ntBASIC2.03□□□□□ -2.08
LINC00643Q86TS7 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.03□□□□□ -2.08
LINC00643Q86TS7 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.03□□□□□ -2.09
LINC00643Q86TS7 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
LINC00643Q86TS7 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC2.03□□□□□ -2.09
LINC00643Q86TS7 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 Z83843.1-201ENST00000604070 3685 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 RNU6-600P-201ENST00000362524 99 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 SNORD56.5-201ENST00000364281 72 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 RNU6-225P-201ENST00000384613 103 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 MIR551B-201ENST00000384984 96 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 MIR298-201ENST00000401212 88 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 BTBD10P2-201ENST00000404779 676 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 RNU6ATAC7P-201ENST00000408111 127 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 RNA5SP274-201ENST00000410484 108 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 BX682237.1-201ENST00000415016 335 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AL451074.5-201ENST00000415894 435 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 ATG3P1-201ENST00000419507 911 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AL356387.2-201ENST00000422272 243 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 NIPA2P1-201ENST00000426223 976 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC104076.1-201ENST00000428080 265 ntTSL 3 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 CCNB1IP1P2-201ENST00000432876 818 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 VDAC1P3-201ENST00000434069 851 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 RPL23AP58-201ENST00000440453 469 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 RPL12P49-201ENST00000441100 121 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 MTCYBP21-201ENST00000443300 1113 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AP000852.1-201ENST00000472460 573 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 ACTR3P3-201ENST00000480448 893 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC013356.1-201ENST00000489027 564 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC026979.1-201ENST00000492525 396 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC024558.1-201ENST00000505008 528 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 IGLVIV-65-201ENST00000517313 360 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 NDUFA5P2-201ENST00000519723 344 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 EIF4A2P3-201ENST00000525903 1055 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC022832.1-201ENST00000530718 645 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC021006.3-201ENST00000530771 192 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms