Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXA1P55317 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.31□□□□□ -1.88
FOXA1P55317 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC3.31□□□□□ -1.88
FOXA1P55317 AC093227.2-201ENST00000589357 285 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 AL451086.1-201ENST00000605596 223 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 AC017076.1-201ENST00000607613 578 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.31□□□□□ -1.88
FOXA1P55317 AC004241.3-201ENST00000611728 517 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 AL121772.2-201ENST00000614331 297 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA1P55317 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA1P55317 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA1P55317 PWAR6-201ENST00000552334 4618 ntBASIC3.31□□□□□ -1.88
FOXA1P55317 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA1P55317 RNA5SP124-201ENST00000362739 110 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA1P55317 SNORA48.7-201ENST00000391302 135 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 AL136131.1-201ENST00000406079 803 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA1P55317 AC126124.2-201ENST00000413542 321 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 CRYBB2P1-203ENST00000415709 538 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 ATP5JP1-201ENST00000431631 322 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA1P55317 RRM2P4-201ENST00000441721 562 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA1P55317 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA1P55317 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA1P55317 EXTL2P1-201ENST00000446218 416 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA1P55317 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA1P55317 AC006539.3-201ENST00000454258 129 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA1P55317 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA1P55317 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
FOXA1P55317 RPS4XP22-201ENST00000480755 780 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 RPL7P47-201ENST00000497299 556 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA1P55317 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.3□□□□□ -1.88
FOXA1P55317 RN7SKP13-201ENST00000515933 244 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA1P55317 AC084033.1-201ENST00000550830 633 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 AGGF1P8-201ENST00000562979 1000 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA1P55317 AC009101.1-201ENST00000568135 242 ntBASIC3.3□□□□□ -1.88
FOXA1P55317 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA1P55317 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA1P55317 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA1P55317 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA1P55317 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA1P55317 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA1P55317 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA1P55317 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
FOXA1P55317 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
FOXA1P55317 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA1P55317 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
FOXA1P55317 RNU1-75P-201ENST00000347264 129 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 SNORA62.2-201ENST00000364672 152 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
FOXA1P55317 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA1P55317 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.29□□□□□ -1.88
FOXA1P55317 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA1P55317 RPL31P12-201ENST00000422587 358 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 CYCSP4-201ENST00000429682 331 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA1P55317 BMS1P19-201ENST00000433925 393 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA1P55317 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA1P55317 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA1P55317 AC008264.1-201ENST00000447612 367 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 AL359073.1-201ENST00000448036 403 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 HMGN1P18-201ENST00000457642 277 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 SLC25A15P5-201ENST00000508033 253 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.29□□□□□ -1.88
FOXA1P55317 AC104619.4-201ENST00000510773 249 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 FABP5P12-201ENST00000515543 389 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 snoU109.6-201ENST00000516831 118 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA1P55317 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA1P55317 AC005476.1-201ENST00000554427 397 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA1P55317 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA1P55317 AC138473.1-201ENST00000605717 526 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 AC005972.3-201ENST00000606304 481 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 AL391261.4-201ENST00000616012 481 ntBASIC3.29□□□□□ -1.88
FOXA1P55317 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.29□□□□□ -1.88
FOXA1P55317 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA1P55317 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA1P55317 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA1P55317 AC007496.3-201ENST00000624987 3443 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 ZNF285B-201ENST00000561698 1767 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA1P55317 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXA1P55317 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
FOXA1P55317 RPL5P19-201ENST00000404228 893 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 AC093578.1-201ENST00000415219 368 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXA1P55317 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms