Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.74□□□□□ -1.81
COL4A4P53420 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.74□□□□□ -1.81
COL4A4P53420 TRIM60P13-201ENST00000432350 1283 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.74□□□□□ -1.81
COL4A4P53420 AP001992.1-205ENST00000462248 379 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.74□□□□□ -1.81
COL4A4P53420 OR5AP1P-201ENST00000529730 940 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.74□□□□□ -1.81
COL4A4P53420 AC027281.1-201ENST00000574178 758 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 AC090079.2-201ENST00000575289 768 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 MIR3945-201ENST00000581853 98 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 CLIC4P2-201ENST00000601934 717 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 AL163642.2-201ENST00000604722 1019 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 AC034229.4-201ENST00000607861 441 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 AC092574.1-201ENST00000609771 420 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 AC013412.1-201ENST00000610687 192 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A4P53420 ATP5A1P2-202ENST00000616464 443 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A4P53420 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
COL4A4P53420 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A4P53420 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A4P53420 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC3.73□□□□□ -1.81
COL4A4P53420 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.73□□□□□ -1.81
COL4A4P53420 CR381670.1-201ENST00000624291 1693 ntBASIC3.73□□□□□ -1.81
COL4A4P53420 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A4P53420 GSTA8P-201ENST00000404253 637 ntBASIC3.73□□□□□ -1.81
COL4A4P53420 AC063979.1-201ENST00000415539 377 ntBASIC3.73□□□□□ -1.81
COL4A4P53420 RANP7-201ENST00000418085 644 ntBASIC3.73□□□□□ -1.81
COL4A4P53420 OR1AA1P-201ENST00000419597 916 ntBASIC3.73□□□□□ -1.81
COL4A4P53420 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
COL4A4P53420 AC000041.1-201ENST00000439655 175 ntBASIC3.73□□□□□ -1.81
COL4A4P53420 HCG17-214ENST00000453558 732 ntTSL 5 BASIC3.73□□□□□ -1.81
COL4A4P53420 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A4P53420 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.73□□□□□ -1.81
COL4A4P53420 AC006023.1-201ENST00000603944 259 ntBASIC3.73□□□□□ -1.81
COL4A4P53420 AC007423.1-201ENST00000605009 627 ntBASIC3.73□□□□□ -1.81
COL4A4P53420 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.73□□□□□ -1.81
COL4A4P53420 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.73□□□□□ -1.81
COL4A4P53420 AC244205.2-202ENST00000635781 342 ntBASIC3.73□□□□□ -1.81
COL4A4P53420 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A4P53420 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.73□□□□□ -1.81
COL4A4P53420 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A4P53420 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
COL4A4P53420 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC3.72□□□□□ -1.81
COL4A4P53420 UBE2V1P2-201ENST00000397758 440 ntBASIC3.72□□□□□ -1.81
COL4A4P53420 ZNF736P10Y-201ENST00000403990 1110 ntBASIC3.72□□□□□ -1.81
COL4A4P53420 HSPE1P8-201ENST00000406997 288 ntBASIC3.72□□□□□ -1.81
COL4A4P53420 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.72□□□□□ -1.81
COL4A4P53420 SKP1P1-201ENST00000438081 489 ntBASIC3.72□□□□□ -1.81
COL4A4P53420 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.72□□□□□ -1.81
COL4A4P53420 KC877373.1-201ENST00000479066 408 ntBASIC3.72□□□□□ -1.81
COL4A4P53420 CR383656.14-201ENST00000551951 406 ntBASIC3.72□□□□□ -1.81
COL4A4P53420 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.72□□□□□ -1.81
COL4A4P53420 AC124312.4-201ENST00000605533 310 ntBASIC3.72□□□□□ -1.81
COL4A4P53420 AC019072.1-201ENST00000604535 1551 ntBASIC3.72□□□□□ -1.81
COL4A4P53420 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
COL4A4P53420 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC3.72□□□□□ -1.81
COL4A4P53420 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.72□□□□□ -1.81
COL4A4P53420 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC3.72□□□□□ -1.81
COL4A4P53420 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A4P53420 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A4P53420 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A4P53420 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.72□□□□□ -1.81
COL4A4P53420 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC3.72□□□□□ -1.81
COL4A4P53420 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL4A4P53420 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC3.72□□□□□ -1.81
COL4A4P53420 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL4A4P53420 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL4A4P53420 AL136131.1-201ENST00000406079 803 ntBASIC3.71□□□□□ -1.81
COL4A4P53420 MTND3P20-201ENST00000407663 186 ntBASIC3.71□□□□□ -1.81
COL4A4P53420 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.71□□□□□ -1.81
COL4A4P53420 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC3.71□□□□□ -1.81
COL4A4P53420 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
COL4A4P53420 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.71□□□□□ -1.81
COL4A4P53420 RPS3AP50-201ENST00000487064 803 ntBASIC3.71□□□□□ -1.81
COL4A4P53420 RPL7P38-201ENST00000488396 739 ntBASIC3.71□□□□□ -1.81
COL4A4P53420 HMGB3P13-201ENST00000511263 607 ntBASIC3.71□□□□□ -1.81
COL4A4P53420 AC027309.2-201ENST00000520566 192 ntBASIC3.71□□□□□ -1.81
COL4A4P53420 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC3.71□□□□□ -1.81
COL4A4P53420 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.71□□□□□ -1.81
COL4A4P53420 AC126365.2-201ENST00000580630 379 ntBASIC3.71□□□□□ -1.81
COL4A4P53420 AC067852.3-201ENST00000589177 561 ntBASIC3.71□□□□□ -1.81
COL4A4P53420 AL451007.1-201ENST00000595491 289 ntBASIC3.71□□□□□ -1.81
COL4A4P53420 AC007620.3-201ENST00000608131 497 ntBASIC3.71□□□□□ -1.81
COL4A4P53420 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC3.71□□□□□ -1.81
COL4A4P53420 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.71□□□□□ -1.81
COL4A4P53420 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL4A4P53420 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL4A4P53420 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC3.71□□□□□ -1.82
COL4A4P53420 Z95331.1-201ENST00000623075 23112 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.71□□□□□ -1.82
COL4A4P53420 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.71□□□□□ -1.82
COL4A4P53420 AC139713.2-215ENST00000641428 5037 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
COL4A4P53420 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.71□□□□□ -1.82
COL4A4P53420 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.71□□□□□ -1.82
COL4A4P53420 SNORA40.4-201ENST00000390971 128 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 AC093719.1-202ENST00000392735 373 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms