Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MRE11P49959 FAM106CP-201ENST00000582212 507 ntBASIC5.7□□□□□ -1.5
MRE11P49959 AC079089.3-201ENST00000603094 673 ntBASIC5.7□□□□□ -1.5
MRE11P49959 AC093765.1-201ENST00000603758 881 ntBASIC5.7□□□□□ -1.5
MRE11P49959 AP001521.2-201ENST00000608772 546 ntBASIC5.7□□□□□ -1.5
MRE11P49959 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC5.7□□□□□ -1.5
MRE11P49959 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MRE11P49959 MIR7703-201ENST00000620784 77 ntBASIC5.7□□□□□ -1.5
MRE11P49959 AC008443.7-201ENST00000622195 246 ntBASIC5.7□□□□□ -1.5
MRE11P49959 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.7□□□□□ -1.5
MRE11P49959 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MRE11P49959 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.7□□□□□ -1.5
MRE11P49959 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MRE11P49959 MAPK10-303ENST00000641324 3959 ntBASIC5.7□□□□□ -1.5
MRE11P49959 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MRE11P49959 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MRE11P49959 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.7□□□□□ -1.5
MRE11P49959 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.69□□□□□ -1.5
MRE11P49959 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.69□□□□□ -1.5
MRE11P49959 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MRE11P49959 INTS6P1-201ENST00000504674 2530 ntBASIC5.69□□□□□ -1.5
MRE11P49959 METTL21EP-201ENST00000298105 713 ntBASIC5.69□□□□□ -1.5
MRE11P49959 RNU6-543P-201ENST00000362576 108 ntBASIC5.69□□□□□ -1.5
MRE11P49959 RNU6-931P-201ENST00000363850 107 ntBASIC5.69□□□□□ -1.5
MRE11P49959 RNU6-707P-201ENST00000364647 95 ntBASIC5.69□□□□□ -1.5
MRE11P49959 RNA5SP90-201ENST00000364801 99 ntBASIC5.69□□□□□ -1.5
MRE11P49959 RNU4-31P-201ENST00000384211 141 ntBASIC5.69□□□□□ -1.5
MRE11P49959 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MRE11P49959 RN7SKP247-201ENST00000411094 308 ntBASIC5.69□□□□□ -1.5
MRE11P49959 VDAC1P9-201ENST00000412766 841 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.69□□□□□ -1.5
MRE11P49959 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.69□□□□□ -1.5
MRE11P49959 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC5.69□□□□□ -1.5
MRE11P49959 AC008072.1-201ENST00000434254 824 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.69□□□□□ -1.5
MRE11P49959 AL450023.3-201ENST00000440592 271 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC5.69□□□□□ -1.5
MRE11P49959 AC005002.1-201ENST00000447458 540 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.69□□□□□ -1.5
MRE11P49959 NPM1P39-201ENST00000449818 867 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AC022431.1-201ENST00000450941 438 ntBASIC5.69□□□□□ -1.5
MRE11P49959 NUTF2P7-201ENST00000453086 375 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AL133244.1-201ENST00000456007 258 ntBASIC5.69□□□□□ -1.5
MRE11P49959 RPS17P2-201ENST00000461663 408 ntBASIC5.69□□□□□ -1.5
MRE11P49959 RN7SL517P-201ENST00000462240 305 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AC011825.1-201ENST00000484967 388 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.69□□□□□ -1.5
MRE11P49959 TBCA-206ENST00000518338 551 ntTSL 2 BASIC5.69□□□□□ -1.5
MRE11P49959 AC023632.1-201ENST00000518463 375 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AC018442.3-201ENST00000523025 183 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AP002963.1-201ENST00000530590 184 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AP000873.5-201ENST00000533906 236 ntBASIC5.69□□□□□ -1.5
MRE11P49959 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.69□□□□□ -1.5
MRE11P49959 EDDM3DP-201ENST00000554692 434 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.69□□□□□ -1.5
MRE11P49959 AC034105.4-201ENST00000568304 277 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AL121834.1-201ENST00000572284 509 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.69□□□□□ -1.5
MRE11P49959 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.69□□□□□ -1.5
MRE11P49959 MIR4298-201ENST00000584380 73 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AC107982.3-201ENST00000584957 985 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AC022146.1-201ENST00000595307 847 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AC006270.3-201ENST00000605967 1036 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AP005432.2-201ENST00000608162 586 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AL451074.6-201ENST00000608512 729 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AC009509.4-201ENST00000619202 509 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AL607023.1-201ENST00000620045 248 ntBASIC5.69□□□□□ -1.5
MRE11P49959 AL603839.4-201ENST00000624658 1005 ntBASIC5.69□□□□□ -1.5
MRE11P49959 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC5.69□□□□□ -1.5
MRE11P49959 MFSD8-216ENST00000641147 4009 ntBASIC5.69□□□□□ -1.5
MRE11P49959 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.69□□□□□ -1.5
MRE11P49959 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MRE11P49959 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
MRE11P49959 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.69□□□□□ -1.5
MRE11P49959 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.68□□□□□ -1.5
MRE11P49959 AC009643.2-201ENST00000603543 1448 ntBASIC5.68□□□□□ -1.5
MRE11P49959 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
MRE11P49959 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
MRE11P49959 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.68□□□□□ -1.5
MRE11P49959 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MRE11P49959 AL137100.1-201ENST00000556703 1620 ntBASIC5.68□□□□□ -1.5
MRE11P49959 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MRE11P49959 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
MRE11P49959 ENSAP3-201ENST00000312710 333 ntBASIC5.68□□□□□ -1.5
MRE11P49959 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MRE11P49959 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.68□□□□□ -1.5
MRE11P49959 OR1L1-202ENST00000373686 1083 ntBASIC5.68□□□□□ -1.5
MRE11P49959 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MRE11P49959 SNORA67-201ENST00000384423 137 ntBASIC5.68□□□□□ -1.5
MRE11P49959 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
MRE11P49959 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
MRE11P49959 U3.35-201ENST00000408405 208 ntBASIC5.68□□□□□ -1.5
MRE11P49959 FCF1P9-201ENST00000412546 282 ntBASIC5.68□□□□□ -1.5
MRE11P49959 PGBD4P8-201ENST00000412993 562 ntBASIC5.68□□□□□ -1.5
MRE11P49959 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.68□□□□□ -1.5
MRE11P49959 AL590806.1-201ENST00000415818 853 ntBASIC5.68□□□□□ -1.5
MRE11P49959 RPL7P57-201ENST00000423238 740 ntBASIC5.68□□□□□ -1.5
MRE11P49959 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.68□□□□□ -1.5
MRE11P49959 FAM96AP1-201ENST00000430879 482 ntBASIC5.68□□□□□ -1.5
MRE11P49959 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms