Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC104785.1-201ENST00000603220 588 ntBASIC4.25□□□□□ -1.73
HNF4AP41235 AC025946.2-201ENST00000603398 234 ntBASIC4.25□□□□□ -1.73
HNF4AP41235 AC115286.1-201ENST00000604298 434 ntBASIC4.25□□□□□ -1.73
HNF4AP41235 AC018754.1-201ENST00000607486 925 ntBASIC4.25□□□□□ -1.73
HNF4AP41235 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.25□□□□□ -1.73
HNF4AP41235 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.25□□□□□ -1.73
HNF4AP41235 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.25□□□□□ -1.73
HNF4AP41235 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HNF4AP41235 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HNF4AP41235 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HNF4AP41235 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HNF4AP41235 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
HNF4AP41235 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.25□□□□□ -1.73
HNF4AP41235 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
HNF4AP41235 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.24□□□□□ -1.73
HNF4AP41235 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HNF4AP41235 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HNF4AP41235 AC067945.1-201ENST00000342609 618 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 RNU1-15P-201ENST00000353977 144 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 RHOT1P2-201ENST00000366423 333 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 VN1R8P-201ENST00000407739 893 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.24□□□□□ -1.73
HNF4AP41235 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.24□□□□□ -1.73
HNF4AP41235 TMSB10P2-201ENST00000416049 131 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 RPS3AP9-201ENST00000417027 792 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.24□□□□□ -1.73
HNF4AP41235 AL009174.1-201ENST00000426577 416 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 AC013262.1-201ENST00000426710 252 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.24□□□□□ -1.73
HNF4AP41235 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 AL353748.1-201ENST00000440753 474 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.24□□□□□ -1.73
HNF4AP41235 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.24□□□□□ -1.73
HNF4AP41235 AC013356.1-201ENST00000489027 564 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 RPS6P4-201ENST00000494693 758 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.24□□□□□ -1.73
HNF4AP41235 TRAV31-201ENST00000502780 342 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 AC005921.1-201ENST00000510589 286 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 PRELID3BP4-201ENST00000515476 571 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 RNU5A-7P-201ENST00000515979 116 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 RNU2-58P-201ENST00000516403 183 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC4.24□□□□□ -1.73
HNF4AP41235 PHBP17-201ENST00000528576 541 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 AP003066.2-201ENST00000529375 555 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.24□□□□□ -1.73
HNF4AP41235 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.24□□□□□ -1.73
HNF4AP41235 ZKSCAN7P1-201ENST00000543668 673 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.24□□□□□ -1.73
HNF4AP41235 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.24□□□□□ -1.73
HNF4AP41235 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
HNF4AP41235 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.24□□□□□ -1.73
HNF4AP41235 AC234771.5-201ENST00000600161 514 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 AL139395.1-201ENST00000603662 160 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 AC079587.1-201ENST00000603846 277 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 AP005229.2-201ENST00000609980 697 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 AL121873.1-201ENST00000616013 524 ntBASIC4.24□□□□□ -1.73
HNF4AP41235 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HNF4AP41235 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HNF4AP41235 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
HNF4AP41235 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HNF4AP41235 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.24□□□□□ -1.73
HNF4AP41235 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HNF4AP41235 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.24□□□□□ -1.73
HNF4AP41235 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HNF4AP41235 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HNF4AP41235 AL157700.1-201ENST00000561973 1432 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HNF4AP41235 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.23□□□□□ -1.73
HNF4AP41235 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.23□□□□□ -1.73
HNF4AP41235 RNU1-130P-201ENST00000363930 160 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 RNA5SP189-201ENST00000364920 115 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.23□□□□□ -1.73
HNF4AP41235 MIR129-1-201ENST00000384972 72 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 SNORD65C-201ENST00000390962 71 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 SSXP10-201ENST00000402595 565 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 RNU6-584P-201ENST00000410350 95 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 MTND4P22-201ENST00000413116 1169 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC4.23□□□□□ -1.73
HNF4AP41235 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.23□□□□□ -1.73
HNF4AP41235 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.23□□□□□ -1.73
HNF4AP41235 AC009480.2-201ENST00000422916 432 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.23□□□□□ -1.73
HNF4AP41235 AC068287.1-201ENST00000430283 295 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC4.23□□□□□ -1.73
HNF4AP41235 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms