Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
CUX1P39880 AC006989.1-201ENST00000427212 131 ntBASIC5.52□□□□□ -1.53
CUX1P39880 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC5.52□□□□□ -1.53
CUX1P39880 AC073587.1-201ENST00000447093 876 ntBASIC5.52□□□□□ -1.53
CUX1P39880 HMGB1P5-202ENST00000451497 985 ntBASIC5.52□□□□□ -1.53
CUX1P39880 RPS3AP50-201ENST00000487064 803 ntBASIC5.52□□□□□ -1.53
CUX1P39880 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC5.52□□□□□ -1.53
CUX1P39880 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.52□□□□□ -1.53
CUX1P39880 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC5.52□□□□□ -1.53
CUX1P39880 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC5.52□□□□□ -1.53
CUX1P39880 AC244517.3-201ENST00000616254 1235 ntBASIC5.52□□□□□ -1.53
CUX1P39880 AC018692.3-201ENST00000623929 123 ntBASIC5.52□□□□□ -1.53
CUX1P39880 YES1-203ENST00000577961 4554 ntTSL 5 BASIC5.52□□□□□ -1.53
CUX1P39880 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CUX1P39880 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.51□□□□□ -1.53
CUX1P39880 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CUX1P39880 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
CUX1P39880 AC116096.1-201ENST00000566804 2314 ntBASIC5.51□□□□□ -1.53
CUX1P39880 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CUX1P39880 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
CUX1P39880 NANOGP6-201ENST00000429190 847 ntBASIC5.51□□□□□ -1.53
CUX1P39880 AC091826.1-201ENST00000514065 313 ntBASIC5.51□□□□□ -1.53
CUX1P39880 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC5.51□□□□□ -1.53
CUX1P39880 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC5.51□□□□□ -1.53
CUX1P39880 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC5.51□□□□□ -1.53
CUX1P39880 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC5.51□□□□□ -1.53
CUX1P39880 KC877982.1-201ENST00000602313 470 ntBASIC5.51□□□□□ -1.53
CUX1P39880 AL713922.2-201ENST00000619384 716 ntBASIC5.51□□□□□ -1.53
CUX1P39880 AC074276.2-201ENST00000619891 348 ntBASIC5.51□□□□□ -1.53
CUX1P39880 BMS1P21-201ENST00000634565 365 ntBASIC5.51□□□□□ -1.53
CUX1P39880 AL513302.2-201ENST00000562313 1842 ntBASIC5.51□□□□□ -1.53
CUX1P39880 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
CUX1P39880 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CUX1P39880 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CUX1P39880 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC5.5□□□□□ -1.53
CUX1P39880 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC5.5□□□□□ -1.53
CUX1P39880 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC5.5□□□□□ -1.53
CUX1P39880 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC5.5□□□□□ -1.53
CUX1P39880 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC5.5□□□□□ -1.53
CUX1P39880 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC5.5□□□□□ -1.53
CUX1P39880 AL049840.6-202ENST00000603373 279 ntBASIC5.5□□□□□ -1.53
CUX1P39880 MIR486-1-201ENST00000612171 68 ntBASIC5.5□□□□□ -1.53
CUX1P39880 AL157817.1-201ENST00000614264 790 ntBASIC5.5□□□□□ -1.53
CUX1P39880 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC5.5□□□□□ -1.53
CUX1P39880 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CUX1P39880 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CUX1P39880 RNA5SP39-201ENST00000411245 120 ntBASIC5.49□□□□□ -1.53
CUX1P39880 AC007899.1-201ENST00000412776 775 ntBASIC5.49□□□□□ -1.53
CUX1P39880 HNRNPKP5-201ENST00000515300 253 ntBASIC5.49□□□□□ -1.53
CUX1P39880 RNA5SP356-201ENST00000515972 94 ntBASIC5.49□□□□□ -1.53
CUX1P39880 AC006518.1-201ENST00000541449 943 ntBASIC5.49□□□□□ -1.53
CUX1P39880 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC5.49□□□□□ -1.53
CUX1P39880 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.49□□□□□ -1.53
CUX1P39880 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CUX1P39880 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC5.49□□□□□ -1.53
CUX1P39880 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CUX1P39880 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC5.48□□□□□ -1.53
CUX1P39880 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.48□□□□□ -1.53
CUX1P39880 AC010469.1-201ENST00000463864 576 ntBASIC5.48□□□□□ -1.53
CUX1P39880 RPL5P16-201ENST00000471467 790 ntBASIC5.48□□□□□ -1.53
CUX1P39880 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC5.48□□□□□ -1.53
CUX1P39880 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.48□□□□□ -1.53
CUX1P39880 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.48□□□□□ -1.53
CUX1P39880 UBL5P2-201ENST00000583788 219 ntBASIC5.48□□□□□ -1.53
CUX1P39880 RPL12P50-201ENST00000603116 116 ntBASIC5.48□□□□□ -1.53
CUX1P39880 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CUX1P39880 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.48□□□□□ -1.53
CUX1P39880 AL645568.2-201ENST00000432815 1337 ntBASIC5.48□□□□□ -1.53
CUX1P39880 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CUX1P39880 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC5.48□□□□□ -1.53
CUX1P39880 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CUX1P39880 RPL35AP12-201ENST00000425362 338 ntBASIC5.48□□□□□ -1.53
CUX1P39880 AL513175.1-201ENST00000431492 780 ntBASIC5.48□□□□□ -1.53
CUX1P39880 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC5.48□□□□□ -1.53
CUX1P39880 AC087888.1-201ENST00000550884 1254 ntBASIC5.48□□□□□ -1.53
CUX1P39880 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CUX1P39880 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CUX1P39880 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CUX1P39880 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
CUX1P39880 AC007390.2-201ENST00000606229 3803 ntBASIC5.47□□□□□ -1.53
CUX1P39880 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.47□□□□□ -1.53
CUX1P39880 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
CUX1P39880 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
CUX1P39880 RNU6-301P-201ENST00000384277 107 ntBASIC5.47□□□□□ -1.53
CUX1P39880 RPL23AP82-202ENST00000427528 469 ntBASIC5.47□□□□□ -1.53
CUX1P39880 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC5.47□□□□□ -1.53
CUX1P39880 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC5.47□□□□□ -1.53
CUX1P39880 AC239809.1-201ENST00000450470 217 ntBASIC5.47□□□□□ -1.53
CUX1P39880 CENPBD1P1-201ENST00000464061 469 ntBASIC5.47□□□□□ -1.53
CUX1P39880 CCDC75P1-201ENST00000469247 791 ntBASIC5.47□□□□□ -1.53
CUX1P39880 NDUFB9P3-201ENST00000521269 501 ntBASIC5.47□□□□□ -1.53
CUX1P39880 AC022080.3-201ENST00000544433 482 ntBASIC5.47□□□□□ -1.53
CUX1P39880 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC5.47□□□□□ -1.53
CUX1P39880 IGHV3-29-201ENST00000604817 344 ntBASIC5.47□□□□□ -1.53
CUX1P39880 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC5.47□□□□□ -1.53
CUX1P39880 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.47□□□□□ -1.53
CUX1P39880 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
CUX1P39880 AC005261.6-201ENST00000623072 1387 ntBASIC5.47□□□□□ -1.53
CUX1P39880 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.53
CUX1P39880 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms