Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC3.92□□□□□ -1.78
HOXA9P31269 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXA9P31269 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.92□□□□□ -1.78
HOXA9P31269 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
HOXA9P31269 AL049874.4-201ENST00000557593 255 ntBASIC3.92□□□□□ -1.78
HOXA9P31269 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.92□□□□□ -1.78
HOXA9P31269 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
HOXA9P31269 AL137849.1-201ENST00000604767 169 ntBASIC3.92□□□□□ -1.78
HOXA9P31269 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA9P31269 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA9P31269 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA9P31269 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA9P31269 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA9P31269 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA9P31269 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
HOXA9P31269 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA9P31269 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
HOXA9P31269 AC017007.4-201ENST00000503353 1352 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
HOXA9P31269 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
HOXA9P31269 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXA9P31269 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA9P31269 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.91□□□□□ -1.78
HOXA9P31269 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA9P31269 MIR491-201ENST00000384877 84 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 RPL7P60-201ENST00000397636 735 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 MIR1183-201ENST00000408856 89 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 ZNF92P1Y-201ENST00000415010 1191 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA9P31269 MTCYBP7-201ENST00000419540 1134 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC3.91□□□□□ -1.78
HOXA9P31269 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA9P31269 AC093698.1-201ENST00000423843 571 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 AC093716.1-201ENST00000435923 377 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA9P31269 RPL7P28-201ENST00000437739 740 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA9P31269 RPL23AP71-201ENST00000470966 469 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 AC005912.1-201ENST00000495392 255 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
HOXA9P31269 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXA9P31269 RAC1P2-201ENST00000511164 579 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXA9P31269 SNORA74D-201ENST00000516404 141 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA9P31269 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXA9P31269 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXA9P31269 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA9P31269 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
HOXA9P31269 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.91□□□□□ -1.78
HOXA9P31269 AL161713.1-201ENST00000555538 145 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXA9P31269 MIR4644-201ENST00000579929 84 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 AC128687.2-201ENST00000609657 566 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 AL359715.5-201ENST00000623431 443 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA9P31269 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.91□□□□□ -1.78
HOXA9P31269 PRO1804-201ENST00000623780 2050 ntBASIC3.91□□□□□ -1.78
HOXA9P31269 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA9P31269 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXA9P31269 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXA9P31269 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
HOXA9P31269 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HOXA9P31269 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXA9P31269 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.9□□□□□ -1.78
HOXA9P31269 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.9□□□□□ -1.78
HOXA9P31269 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
HOXA9P31269 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.9□□□□□ -1.79
HOXA9P31269 RNA5SP424-201ENST00000390988 115 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HOXA9P31269 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA9P31269 OR5AW1P-201ENST00000426334 1006 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 SNORA71B-202ENST00000439232 272 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 AL353093.1-201ENST00000441292 436 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 CYCSP35-201ENST00000451978 304 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HOXA9P31269 AC105918.1-201ENST00000474399 838 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 AC012170.1-201ENST00000495139 359 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXA9P31269 SNORA70.24-201ENST00000517233 118 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXA9P31269 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA9P31269 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HOXA9P31269 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA9P31269 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA9P31269 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA9P31269 AC010591.1-201ENST00000603941 649 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 AC115621.1-201ENST00000604653 858 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 HMGB1P50-201ENST00000605814 607 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 AC107308.1-201ENST00000615897 301 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA9P31269 AC091953.5-201ENST00000622919 233 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 AC004943.3-201ENST00000624116 600 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.9□□□□□ -1.79
HOXA9P31269 AL392088.2-201ENST00000637607 285 ntBASIC3.9□□□□□ -1.79
HOXA9P31269 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXA9P31269 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXA9P31269 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms