Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RPL23AP71-201ENST00000470966 469 ntBASIC3.39□□□□□ -1.87
USF1P22415 RPS4XP15-201ENST00000489210 795 ntBASIC3.39□□□□□ -1.87
USF1P22415 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.39□□□□□ -1.87
USF1P22415 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.39□□□□□ -1.87
USF1P22415 MIR2114-201ENST00000516645 80 ntBASIC3.39□□□□□ -1.87
USF1P22415 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.39□□□□□ -1.87
USF1P22415 HAUS1P3-201ENST00000523909 662 ntBASIC3.39□□□□□ -1.87
USF1P22415 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.39□□□□□ -1.87
USF1P22415 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC3.39□□□□□ -1.87
USF1P22415 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.39□□□□□ -1.87
USF1P22415 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.39□□□□□ -1.87
USF1P22415 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.39□□□□□ -1.87
USF1P22415 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.39□□□□□ -1.87
USF1P22415 AC025627.2-201ENST00000576220 160 ntBASIC3.39□□□□□ -1.87
USF1P22415 AC005242.1-201ENST00000585658 438 ntBASIC3.39□□□□□ -1.87
USF1P22415 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.39□□□□□ -1.87
USF1P22415 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.39□□□□□ -1.87
USF1P22415 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
USF1P22415 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC3.39□□□□□ -1.87
USF1P22415 AC083899.3-201ENST00000603413 594 ntBASIC3.39□□□□□ -1.87
USF1P22415 BX322635.1-201ENST00000605804 496 ntBASIC3.39□□□□□ -1.87
USF1P22415 AC012603.1-201ENST00000606424 528 ntBASIC3.39□□□□□ -1.87
USF1P22415 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.39□□□□□ -1.87
USF1P22415 AC006946.3-201ENST00000609791 756 ntBASIC3.39□□□□□ -1.87
USF1P22415 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
USF1P22415 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
USF1P22415 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.39□□□□□ -1.87
USF1P22415 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
USF1P22415 AC009501.3-201ENST00000605001 1352 ntBASIC3.38□□□□□ -1.87
USF1P22415 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USF1P22415 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.38□□□□□ -1.87
USF1P22415 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.38□□□□□ -1.87
USF1P22415 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USF1P22415 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
USF1P22415 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
USF1P22415 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
USF1P22415 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USF1P22415 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.38□□□□□ -1.87
USF1P22415 U3.15-201ENST00000365398 212 ntBASIC3.38□□□□□ -1.87
USF1P22415 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USF1P22415 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC3.38□□□□□ -1.87
USF1P22415 RNU6-213P-201ENST00000384051 104 ntBASIC3.38□□□□□ -1.87
USF1P22415 RNA5SP306-201ENST00000411087 107 ntBASIC3.38□□□□□ -1.87
USF1P22415 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USF1P22415 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.38□□□□□ -1.87
USF1P22415 AC069157.1-201ENST00000421749 137 ntBASIC3.38□□□□□ -1.87
USF1P22415 MTND2P11-201ENST00000423638 648 ntBASIC3.38□□□□□ -1.87
USF1P22415 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC3.38□□□□□ -1.87
USF1P22415 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.38□□□□□ -1.87
USF1P22415 AL500522.2-201ENST00000448562 343 ntBASIC3.38□□□□□ -1.87
USF1P22415 OR9M1P-201ENST00000459641 921 ntBASIC3.38□□□□□ -1.87
USF1P22415 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.38□□□□□ -1.87
USF1P22415 RNA5SP309-201ENST00000516670 106 ntBASIC3.38□□□□□ -1.87
USF1P22415 TRMT10BP1-201ENST00000519377 943 ntBASIC3.38□□□□□ -1.87
USF1P22415 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.38□□□□□ -1.87
USF1P22415 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.38□□□□□ -1.87
USF1P22415 CYCSP30-201ENST00000546447 172 ntBASIC3.38□□□□□ -1.87
USF1P22415 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.38□□□□□ -1.87
USF1P22415 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC3.38□□□□□ -1.87
USF1P22415 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.38□□□□□ -1.87
USF1P22415 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.38□□□□□ -1.87
USF1P22415 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.38□□□□□ -1.87
USF1P22415 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC3.38□□□□□ -1.87
USF1P22415 AL451044.1-201ENST00000604867 238 ntBASIC3.38□□□□□ -1.87
USF1P22415 AC015849.2-201ENST00000605738 409 ntBASIC3.38□□□□□ -1.87
USF1P22415 MIR6868-201ENST00000611215 58 ntBASIC3.38□□□□□ -1.87
USF1P22415 AC064801.1-201ENST00000612025 407 ntBASIC3.38□□□□□ -1.87
USF1P22415 AC004777.1-201ENST00000624317 287 ntBASIC3.38□□□□□ -1.87
USF1P22415 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.38□□□□□ -1.87
USF1P22415 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
USF1P22415 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USF1P22415 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
USF1P22415 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
USF1P22415 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USF1P22415 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.38□□□□□ -1.87
USF1P22415 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.38□□□□□ -1.87
USF1P22415 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USF1P22415 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.38□□□□□ -1.87
USF1P22415 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
USF1P22415 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.37□□□□□ -1.87
USF1P22415 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
USF1P22415 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
USF1P22415 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USF1P22415 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USF1P22415 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.37□□□□□ -1.87
USF1P22415 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
USF1P22415 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
USF1P22415 METTL21EP-201ENST00000298105 713 ntBASIC3.37□□□□□ -1.87
USF1P22415 SNORA71.3-201ENST00000362582 128 ntBASIC3.37□□□□□ -1.87
USF1P22415 SNORD35B-201ENST00000363660 87 ntBASIC3.37□□□□□ -1.87
USF1P22415 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.37□□□□□ -1.87
USF1P22415 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.37□□□□□ -1.87
USF1P22415 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
USF1P22415 RNU6-98P-201ENST00000384173 107 ntBASIC3.37□□□□□ -1.87
USF1P22415 MIR7-3-201ENST00000384898 110 ntBASIC3.37□□□□□ -1.87
USF1P22415 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
USF1P22415 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.37□□□□□ -1.87
USF1P22415 HMGB1P13-201ENST00000406019 642 ntBASIC3.37□□□□□ -1.87
USF1P22415 HNRNPDP2-201ENST00000406475 478 ntBASIC3.37□□□□□ -1.87
USF1P22415 RN7SKP56-201ENST00000410513 331 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms