Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 HMGN1P5-201ENST00000448591 263 ntBASIC3.71□□□□□ -1.82
SDC1P18827 HMGB3P21-201ENST00000452483 547 ntBASIC3.71□□□□□ -1.82
SDC1P18827 DNAJC19P8-201ENST00000452887 259 ntBASIC3.71□□□□□ -1.82
SDC1P18827 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
SDC1P18827 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC3.71□□□□□ -1.82
SDC1P18827 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 RN7SKP283-201ENST00000517197 270 ntBASIC3.71□□□□□ -1.82
SDC1P18827 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 AC010306.1-201ENST00000523223 1117 ntBASIC3.71□□□□□ -1.82
SDC1P18827 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.71□□□□□ -1.82
SDC1P18827 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.71□□□□□ -1.82
SDC1P18827 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.71□□□□□ -1.82
SDC1P18827 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC3.71□□□□□ -1.82
SDC1P18827 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SDC1P18827 AC020914.4-201ENST00000597690 277 ntBASIC3.71□□□□□ -1.82
SDC1P18827 AC069304.3-201ENST00000603938 1084 ntBASIC3.71□□□□□ -1.82
SDC1P18827 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.71□□□□□ -1.82
SDC1P18827 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.71□□□□□ -1.82
SDC1P18827 AP006248.2-201ENST00000623309 592 ntBASIC3.71□□□□□ -1.82
SDC1P18827 AC073530.2-201ENST00000623987 261 ntBASIC3.71□□□□□ -1.82
SDC1P18827 AC090506.2-201ENST00000624521 419 ntBASIC3.71□□□□□ -1.82
SDC1P18827 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.71□□□□□ -1.82
SDC1P18827 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SDC1P18827 AC083899.2-201ENST00000423285 1376 ntBASIC3.71□□□□□ -1.82
SDC1P18827 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC1P18827 FAM35DP-201ENST00000323387 2712 ntBASIC3.71□□□□□ -1.82
SDC1P18827 AL136520.1-201ENST00000600311 1322 ntBASIC3.7□□□□□ -1.82
SDC1P18827 MAPK10-373ENST00000641983 6772 ntBASIC3.7□□□□□ -1.82
SDC1P18827 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
SDC1P18827 AC009951.1-201ENST00000623674 2614 ntBASIC3.7□□□□□ -1.82
SDC1P18827 LINC00561-201ENST00000565815 2738 ntBASIC3.7□□□□□ -1.82
SDC1P18827 RNU1-18P-201ENST00000363062 164 ntBASIC3.7□□□□□ -1.82
SDC1P18827 RNU6-468P-201ENST00000384003 109 ntBASIC3.7□□□□□ -1.82
SDC1P18827 MIR199A2-201ENST00000385289 110 ntBASIC3.7□□□□□ -1.82
SDC1P18827 RNU2-65P-201ENST00000410162 185 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AMD1P2-201ENST00000412936 992 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SDC1P18827 AC114814.2-201ENST00000419195 485 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC1P18827 AL031736.2-201ENST00000426573 787 ntBASIC3.7□□□□□ -1.82
SDC1P18827 DEFB130D-201ENST00000426866 237 ntBASIC3.7□□□□□ -1.82
SDC1P18827 RPS6P12-201ENST00000432491 726 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.7□□□□□ -1.82
SDC1P18827 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC1P18827 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.7□□□□□ -1.82
SDC1P18827 AC009263.1-201ENST00000441193 1239 ntBASIC3.7□□□□□ -1.82
SDC1P18827 HSFY3P-201ENST00000444242 1191 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.7□□□□□ -1.82
SDC1P18827 AC023050.1-201ENST00000498198 304 ntBASIC3.7□□□□□ -1.82
SDC1P18827 FTH1P24-201ENST00000503502 462 ntBASIC3.7□□□□□ -1.82
SDC1P18827 PRELID3BP7-201ENST00000503606 469 ntBASIC3.7□□□□□ -1.82
SDC1P18827 RAB9BP1-201ENST00000519581 626 ntBASIC3.7□□□□□ -1.82
SDC1P18827 NDUFA5P2-201ENST00000519723 344 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AC138701.1-201ENST00000524329 714 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC1P18827 OR4A12P-201ENST00000530847 918 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.7□□□□□ -1.82
SDC1P18827 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC1P18827 TMF1P1-201ENST00000576058 373 ntBASIC3.7□□□□□ -1.82
SDC1P18827 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SDC1P18827 RNU4-89P-201ENST00000607443 133 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AL445423.1-201ENST00000609941 536 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AC005962.2-201ENST00000611427 652 ntBASIC3.7□□□□□ -1.82
SDC1P18827 MLECP1-201ENST00000615893 709 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AC004825.2-201ENST00000616634 455 ntBASIC3.7□□□□□ -1.82
SDC1P18827 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SDC1P18827 AC093875.1-201ENST00000623688 504 ntBASIC3.7□□□□□ -1.82
SDC1P18827 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.7□□□□□ -1.82
SDC1P18827 AC106858.1-201ENST00000637497 429 ntBASIC3.7□□□□□ -1.82
SDC1P18827 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC1P18827 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SDC1P18827 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC1P18827 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.7□□□□□ -1.82
SDC1P18827 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
SDC1P18827 AC119744.1-201ENST00000454746 1715 ntBASIC3.7□□□□□ -1.82
SDC1P18827 AL049737.1-201ENST00000413920 1403 ntBASIC3.7□□□□□ -1.82
SDC1P18827 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.69□□□□□ -1.82
SDC1P18827 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SDC1P18827 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.69□□□□□ -1.82
SDC1P18827 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SDC1P18827 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SDC1P18827 RNU6-1339P-201ENST00000363574 91 ntBASIC3.69□□□□□ -1.82
SDC1P18827 SNORD65C-201ENST00000390962 71 ntBASIC3.69□□□□□ -1.82
SDC1P18827 ATP5F1P4-201ENST00000397288 746 ntBASIC3.69□□□□□ -1.82
SDC1P18827 AL035405.1-201ENST00000400795 710 ntBASIC3.69□□□□□ -1.82
SDC1P18827 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.69□□□□□ -1.82
SDC1P18827 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC3.69□□□□□ -1.82
SDC1P18827 AL356095.1-201ENST00000417217 199 ntBASIC3.69□□□□□ -1.82
SDC1P18827 CYP4F29P-201ENST00000420685 446 ntBASIC3.69□□□□□ -1.82
SDC1P18827 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SDC1P18827 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.69□□□□□ -1.82
SDC1P18827 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms