Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.82□□□□□ -1.8
APOEP02649 OR6C71P-202ENST00000641886 1107 ntBASIC3.82□□□□□ -1.8
APOEP02649 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.82□□□□□ -1.8
APOEP02649 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
APOEP02649 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
APOEP02649 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
APOEP02649 CEP170P1-201ENST00000502249 4587 ntBASIC3.82□□□□□ -1.8
APOEP02649 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.82□□□□□ -1.8
APOEP02649 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
APOEP02649 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
APOEP02649 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.81□□□□□ -1.8
APOEP02649 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
APOEP02649 SNORA5A-201ENST00000384111 134 ntBASIC3.81□□□□□ -1.8
APOEP02649 RNU6-225P-201ENST00000384613 103 ntBASIC3.81□□□□□ -1.8
APOEP02649 MIR200C-201ENST00000384980 68 ntBASIC3.81□□□□□ -1.8
APOEP02649 RPL7P60-201ENST00000397636 735 ntBASIC3.81□□□□□ -1.8
APOEP02649 AL034403.1-201ENST00000399414 885 ntBASIC3.81□□□□□ -1.8
APOEP02649 AL391417.1-201ENST00000404100 426 ntBASIC3.81□□□□□ -1.8
APOEP02649 RN7SKP27-201ENST00000410684 333 ntBASIC3.81□□□□□ -1.8
APOEP02649 AC069218.2-201ENST00000411665 344 ntBASIC3.81□□□□□ -1.8
APOEP02649 RAB9AP3-201ENST00000412737 573 ntBASIC3.81□□□□□ -1.8
APOEP02649 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.81□□□□□ -1.8
APOEP02649 AL691447.1-201ENST00000419456 387 ntBASIC3.81□□□□□ -1.8
APOEP02649 MTCYBP7-201ENST00000419540 1134 ntBASIC3.81□□□□□ -1.8
APOEP02649 AC048351.1-201ENST00000420064 602 ntBASIC3.81□□□□□ -1.8
APOEP02649 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.81□□□□□ -1.8
APOEP02649 MOB1AP1-201ENST00000430903 535 ntBASIC3.81□□□□□ -1.8
APOEP02649 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.81□□□□□ -1.8
APOEP02649 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.81□□□□□ -1.8
APOEP02649 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
APOEP02649 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.81□□□□□ -1.8
APOEP02649 RAB9AP1-201ENST00000449393 573 ntBASIC3.81□□□□□ -1.8
APOEP02649 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.81□□□□□ -1.8
APOEP02649 AC018635.1-201ENST00000468292 1030 ntBASIC3.81□□□□□ -1.8
APOEP02649 AC078785.3-201ENST00000476607 425 ntBASIC3.81□□□□□ -1.8
APOEP02649 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.81□□□□□ -1.8
APOEP02649 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC3.81□□□□□ -1.8
APOEP02649 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.81□□□□□ -1.8
APOEP02649 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.81□□□□□ -1.8
APOEP02649 RN7SKP18-201ENST00000516005 275 ntBASIC3.81□□□□□ -1.8
APOEP02649 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC3.81□□□□□ -1.8
APOEP02649 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.81□□□□□ -1.8
APOEP02649 TRAV15-201ENST00000556680 249 ntBASIC3.81□□□□□ -1.8
APOEP02649 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.81□□□□□ -1.8
APOEP02649 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.81□□□□□ -1.8
APOEP02649 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.81□□□□□ -1.8
APOEP02649 AC027281.1-201ENST00000574178 758 ntBASIC3.81□□□□□ -1.8
APOEP02649 AC006946.3-201ENST00000609791 756 ntBASIC3.81□□□□□ -1.8
APOEP02649 AC008121.2-201ENST00000614647 523 ntBASIC3.81□□□□□ -1.8
APOEP02649 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
APOEP02649 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.81□□□□□ -1.8
APOEP02649 U6.98-201ENST00000637157 84 ntBASIC3.81□□□□□ -1.8
APOEP02649 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
APOEP02649 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
APOEP02649 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.81□□□□□ -1.8
APOEP02649 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
APOEP02649 AL139811.1-201ENST00000424779 2299 ntBASIC3.81□□□□□ -1.8
APOEP02649 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.81□□□□□ -1.8
APOEP02649 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
APOEP02649 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
APOEP02649 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
APOEP02649 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.8□□□□□ -1.8
APOEP02649 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.8□□□□□ -1.8
APOEP02649 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.8□□□□□ -1.8
APOEP02649 RNA5SP51-201ENST00000364750 119 ntBASIC3.8□□□□□ -1.8
APOEP02649 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.8□□□□□ -1.8
APOEP02649 ATP5A1P2-201ENST00000412323 255 ntBASIC3.8□□□□□ -1.8
APOEP02649 RPL30P2-201ENST00000414021 291 ntBASIC3.8□□□□□ -1.8
APOEP02649 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.8□□□□□ -1.8
APOEP02649 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.8□□□□□ -1.8
APOEP02649 AL353093.1-201ENST00000441292 436 ntBASIC3.8□□□□□ -1.8
APOEP02649 HMGB3P8-201ENST00000449709 577 ntBASIC3.8□□□□□ -1.8
APOEP02649 CALM1P2-201ENST00000452941 448 ntBASIC3.8□□□□□ -1.8
APOEP02649 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.8□□□□□ -1.8
APOEP02649 CFTRP1-201ENST00000456646 183 ntBASIC3.8□□□□□ -1.8
APOEP02649 AC005229.2-201ENST00000456995 399 ntBASIC3.8□□□□□ -1.8
APOEP02649 AP002812.1-201ENST00000495378 474 ntBASIC3.8□□□□□ -1.8
APOEP02649 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
APOEP02649 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
APOEP02649 CDH12P2-201ENST00000504393 298 ntBASIC3.8□□□□□ -1.8
APOEP02649 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.8□□□□□ -1.8
APOEP02649 AC008489.1-201ENST00000524271 483 ntBASIC3.8□□□□□ -1.8
APOEP02649 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.8□□□□□ -1.8
APOEP02649 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.8□□□□□ -1.8
APOEP02649 AC087888.1-201ENST00000550884 1254 ntBASIC3.8□□□□□ -1.8
APOEP02649 MIR4716-201ENST00000579628 84 ntBASIC3.8□□□□□ -1.8
APOEP02649 MIR3158-1-201ENST00000583596 81 ntBASIC3.8□□□□□ -1.8
APOEP02649 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC3.8□□□□□ -1.8
APOEP02649 AC009318.3-201ENST00000616916 503 ntBASIC3.8□□□□□ -1.8
APOEP02649 AC006133.1-201ENST00000617106 264 ntBASIC3.8□□□□□ -1.8
APOEP02649 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
APOEP02649 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
APOEP02649 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
APOEP02649 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
APOEP02649 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.79□□□□□ -1.8
APOEP02649 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
APOEP02649 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
APOEP02649 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
APOEP02649 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
APOEP02649 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms