Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL358832.1-201ENST00000497800 389 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC112204.1-201ENST00000502591 103 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 DEFB108A-201ENST00000530110 222 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC063949.1-201ENST00000552900 865 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AL359219.2-201ENST00000555184 348 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AL359999.1-201ENST00000604513 294 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC126118.1-201ENST00000607744 628 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC024941.1-201ENST00000612250 334 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC091834.1-201ENST00000614543 472 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 MIR6837-201ENST00000620884 64 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
TRIM39Q9HCM9 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
TRIM39Q9HCM9 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.4□□□□□ -1.55
TRIM39Q9HCM9 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
TRIM39Q9HCM9 AC079097.1-201ENST00000512187 1399 ntBASIC5.4□□□□□ -1.55
TRIM39Q9HCM9 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
TRIM39Q9HCM9 AL022578.1-201ENST00000439330 1433 ntBASIC5.4□□□□□ -1.55
TRIM39Q9HCM9 AP001029.2-203ENST00000589795 4910 ntBASIC5.4□□□□□ -1.55
TRIM39Q9HCM9 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC006210.2-201ENST00000367074 1545 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC005332.5-201ENST00000591222 2919 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 RNU6-777P-201ENST00000364265 104 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 SNORA16A-201ENST00000384342 137 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 RNU6-146P-201ENST00000384602 108 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 RNU6-952P-201ENST00000391164 108 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 DHFRP6-201ENST00000401776 268 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 SRSF1P1-201ENST00000424058 520 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 NPM1P34-201ENST00000428821 893 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 CFL1P1-202ENST00000432948 411 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 MTND3P21-201ENST00000433774 331 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC099670.2-201ENST00000435130 321 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 RPS3AP54-201ENST00000435535 734 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC073614.1-201ENST00000438690 650 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 GDI2P2-201ENST00000445131 608 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 EIF4A1P11-201ENST00000451239 222 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC108941.1-201ENST00000502853 530 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 GTF2F2P1-201ENST00000511083 675 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 RNA5SP228-201ENST00000516232 133 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 RNU6-941P-201ENST00000516346 108 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 COX6CP8-201ENST00000522620 226 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 OR8Q1P-201ENST00000526467 655 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 LARP7P2-201ENST00000575306 125 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC011477.5-201ENST00000586571 259 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 FKBP1AP1-201ENST00000594588 318 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 RPL23AP92-201ENST00000603609 255 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC090948.2-201ENST00000607363 564 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC073534.2-201ENST00000620377 381 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 CYP3A51P-201ENST00000633513 256 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC073869.8-201ENST00000641806 335 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AL451142.2-201ENST00000429076 2090 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AC012020.1-201ENST00000624541 1728 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 ZNF33BP1-201ENST00000452497 1834 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms