Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 RNU6-1339P-201ENST00000363574 91 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 RNY3P9-201ENST00000384727 106 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 MTND4P13-201ENST00000402078 1023 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AL121834.1-202ENST00000404494 277 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 RNA5SP104-201ENST00000410989 118 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AL356320.2-201ENST00000417263 507 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AL161631.1-201ENST00000417933 486 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AL132765.1-201ENST00000434165 553 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC084290.1-201ENST00000434995 374 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 RPL7P22-201ENST00000466005 733 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC017037.1-201ENST00000508460 471 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC119751.5-201ENST00000514077 770 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 OR4A2P-201ENST00000527276 913 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC006064.5-201ENST00000541782 248 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AL109766.1-201ENST00000555080 552 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC068831.4-201ENST00000556118 109 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AL020997.3-201ENST00000602843 359 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 U6.48-201ENST00000618523 106 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 VN1R7P-201ENST00000619242 903 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 Z99129.2-201ENST00000619967 314 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC008785.1-201ENST00000624475 456 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.43□□□□□ -1.7
PCDH9Q9HC56 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PCDH9Q9HC56 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 MIR331-201ENST00000362302 94 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 RNA5SP388-201ENST00000362584 119 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 RNU1-87P-201ENST00000363727 170 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 SNORD74.4-201ENST00000364129 80 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 RNU6-225P-201ENST00000384613 103 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 MIR708-201ENST00000390708 88 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AC004690.1-201ENST00000418216 328 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AC114814.2-201ENST00000419195 485 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 EIF1P3-201ENST00000423841 334 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 RPL12P34-201ENST00000424532 479 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AL353748.1-201ENST00000440753 474 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 PHBP16-201ENST00000446318 950 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 VN1R40P-201ENST00000455196 941 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 RPL23AP24-201ENST00000458203 385 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 RN7SL585P-201ENST00000470538 280 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AC006463.2-201ENST00000473326 348 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 RPL23AP44-201ENST00000482216 473 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 RN7SL810P-201ENST00000493031 276 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 HPRT1P2-201ENST00000505250 544 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 MRPS36P3-201ENST00000519284 130 ntBASIC4.42□□□□□ -1.7
PCDH9Q9HC56 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
PCDH9Q9HC56 MTATP6P15-201ENST00000527233 835 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms