Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 Y_RNA.9-201ENST00000362354 101 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 RNU6-114P-201ENST00000384704 105 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 RN7SKP151-201ENST00000410230 316 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 RNA5SP56-201ENST00000410277 118 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 RNU4-78P-201ENST00000410940 126 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 RPSAP35-201ENST00000413753 818 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 MTND4LP11-201ENST00000422184 280 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 USP9YP18-201ENST00000425912 695 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC016027.5-201ENST00000427227 210 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC137499.1-201ENST00000427602 88 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC133104.1-201ENST00000429100 218 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 BX679664.2-201ENST00000439282 283 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC064862.4-201ENST00000442180 334 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 C1DP4-201ENST00000455429 424 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC023141.9-201ENST00000458734 412 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 SNORD121B-201ENST00000458838 81 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AL672167.3-201ENST00000465951 960 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 RN7SL189P-201ENST00000468631 289 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 RPL23AP40-201ENST00000487630 390 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AL035690.1-201ENST00000490892 383 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC109462.1-201ENST00000491087 368 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC010587.1-201ENST00000505809 469 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 RNU6-718P-201ENST00000516166 105 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 OR8Q1P-201ENST00000526467 655 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 MTCYBP41-201ENST00000528913 1123 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AHI1-217ENST00000534469 680 ntTSL 3 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 SETP7-201ENST00000552169 453 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 IMMP1LP1-201ENST00000605170 488 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AL365503.1-201ENST00000605247 905 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC010424.2-201ENST00000607594 443 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 WWOX-217ENST00000620008 450 ntTSL 2 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AC002550.2-201ENST00000621246 394 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 LRRC77P-213ENST00000637727 880 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 BTBD10P1-201ENST00000549824 1352 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 MIR323A-201ENST00000362199 86 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 SNORA51.1-201ENST00000363243 140 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 GNG5P2-201ENST00000372054 207 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 MIR143-201ENST00000385300 106 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 RNU6-278P-201ENST00000390945 109 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 RNU6-837P-201ENST00000391056 108 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 MTCO3P40-201ENST00000392516 676 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 AL590002.1-201ENST00000406554 418 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 AL513325.1-201ENST00000417716 1034 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 AC015977.1-201ENST00000418887 292 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 AL359385.1-201ENST00000456509 365 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 RN7SL717P-201ENST00000478343 297 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 AC124945.1-201ENST00000485133 188 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 AC023194.1-201ENST00000493084 308 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 RN7SL57P-201ENST00000493687 290 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 PTGES3P3-201ENST00000511479 482 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 SNORA70.20-201ENST00000516848 126 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 HMGN1P28-201ENST00000521340 364 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 HMGN2P36-201ENST00000529541 409 ntBASIC6.49□□□□□ -1.37
TRAIPQ9BWF2 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms