Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC010608.2-201ENST00000624830 470 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 CR392039.4-201ENST00000624968 501 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC009452.1-201ENST00000640823 606 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SKA3Q8IX90 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SKA3Q8IX90 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SKA3Q8IX90 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
SKA3Q8IX90 OR11H4-201ENST00000315409 1082 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 AL121657.1-201ENST00000327215 531 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC068538.1-201ENST00000376856 336 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 RNU11-4P-201ENST00000391149 133 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 AL049693.1-201ENST00000402760 611 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 RPL31P52-201ENST00000407532 367 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 BX664727.1-201ENST00000416024 466 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC108032.1-201ENST00000416706 207 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC008173.1-201ENST00000418901 264 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 SLC4A1APP1-201ENST00000419995 602 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 MRPL50P1-201ENST00000431951 384 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 RPL38P1-201ENST00000460914 211 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 AL049829.1-201ENST00000465411 156 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 OR5H3P-201ENST00000502817 919 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AL590392.1-201ENST00000604960 446 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 BNIP3P19-201ENST00000605397 577 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC120053.1-201ENST00000607706 736 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 MIR7151-201ENST00000617477 60 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 AC244205.2-202ENST00000635781 342 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 U6.107-201ENST00000637108 79 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SKA3Q8IX90 BDP1P-201ENST00000582658 1990 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 MFSD8-213ENST00000641134 1327 ntBASIC3.59□□□□□ -1.83
SKA3Q8IX90 MTCO1P4-201ENST00000520516 1409 ntBASIC3.59□□□□□ -1.84
SKA3Q8IX90 HSPA8P19-201ENST00000505359 1517 ntBASIC3.59□□□□□ -1.84
SKA3Q8IX90 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SKA3Q8IX90 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SKA3Q8IX90 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SKA3Q8IX90 SNORD35B-201ENST00000363660 87 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 RNA5SP27-201ENST00000363839 119 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SKA3Q8IX90 MTATP6P31-201ENST00000406985 692 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 ETF1P3-201ENST00000430422 1160 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 RPS4XP4-201ENST00000443195 763 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SKA3Q8IX90 TPT1P12-201ENST00000448968 492 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 ANP32BP2-201ENST00000454525 545 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 SNRPGP5-201ENST00000456003 220 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 RPL7L1P8-201ENST00000469911 741 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 TRBV8-2-201ENST00000475637 270 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 RPL29P14-201ENST00000495837 428 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 AC025554.1-201ENST00000505641 188 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 RNU6-1231P-201ENST00000517185 103 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 AC092451.2-201ENST00000538746 658 ntBASIC3.58□□□□□ -1.84
SKA3Q8IX90 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.58□□□□□ -1.84
SKA3Q8IX90 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SKA3Q8IX90 MTND4LP24-201ENST00000572277 291 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms