Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXF1Q12946 AL365440.1-201ENST00000436135 2167 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXF1Q12946 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXF1Q12946 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXF1Q12946 MIR200C-201ENST00000384980 68 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 RNA5SP239-201ENST00000410218 129 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 RN7SKP177-201ENST00000410567 355 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXF1Q12946 CRYBB2P1-203ENST00000415709 538 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXF1Q12946 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXF1Q12946 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXF1Q12946 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXF1Q12946 RPL12P46-201ENST00000436610 195 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXF1Q12946 RPS29P31-201ENST00000446147 164 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 AL035551.1-201ENST00000446931 348 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXF1Q12946 IFNWP4-201ENST00000453148 294 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 AC004801.2-202ENST00000463559 283 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXF1Q12946 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXF1Q12946 HMGB1P23-201ENST00000518743 568 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 IGHV3-32-201ENST00000519182 355 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 AP006245.1-201ENST00000522549 120 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXF1Q12946 AC103843.2-201ENST00000530523 682 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXF1Q12946 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXF1Q12946 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXF1Q12946 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXF1Q12946 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXF1Q12946 AC243312.2-201ENST00000623340 601 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 AC112200.1-201ENST00000625015 234 ntBASIC3.18□□□□□ -1.9
FOXF1Q12946 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXF1Q12946 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXF1Q12946 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXF1Q12946 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXF1Q12946 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXF1Q12946 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXF1Q12946 NMD3P1-201ENST00000439704 1488 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AC068647.1-201ENST00000489539 2265 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXF1Q12946 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
FOXF1Q12946 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXF1Q12946 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXF1Q12946 MIR218-2-201ENST00000385006 110 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AC093719.1-202ENST00000392735 373 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXF1Q12946 ATP5F1P3-201ENST00000397213 657 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXF1Q12946 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
FOXF1Q12946 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXF1Q12946 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXF1Q12946 AC017079.2-201ENST00000416102 485 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.17□□□□□ -1.9
FOXF1Q12946 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXF1Q12946 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXF1Q12946 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXF1Q12946 MTND4LP13-201ENST00000425022 298 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 DPY19L1P2-201ENST00000426647 915 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXF1Q12946 AC017083.1-201ENST00000428093 483 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXF1Q12946 ATP5JP1-201ENST00000431631 322 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 HMGN2P31-201ENST00000432430 273 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AC245517.2-201ENST00000442890 346 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 RPL21P23-201ENST00000446654 460 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AC239367.2-201ENST00000447309 705 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 RPL7P48-201ENST00000461513 746 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AC007537.2-201ENST00000472093 511 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.17□□□□□ -1.9
FOXF1Q12946 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXF1Q12946 SETP14-201ENST00000497538 873 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
FOXF1Q12946 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXF1Q12946 AC026784.1-201ENST00000507986 352 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 HMGN1P15-201ENST00000513870 295 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXF1Q12946 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXF1Q12946 DUXAP6-201ENST00000553858 601 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXF1Q12946 CYP2C60P-201ENST00000566088 139 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXF1Q12946 MIR4738-201ENST00000579134 87 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 MIR1254-2-201ENST00000579553 63 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 MIR3922-201ENST00000585192 84 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXF1Q12946 VN1R79P-201ENST00000593540 513 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 BNIP3P38-201ENST00000601117 544 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 RMST_8.1-201ENST00000610287 165 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 MIR7851-201ENST00000610611 160 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 AC022149.2-201ENST00000621061 203 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXF1Q12946 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXF1Q12946 PHKBP1-201ENST00000450951 1951 ntBASIC3.17□□□□□ -1.9
FOXF1Q12946 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXF1Q12946 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
FOXF1Q12946 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 268.7 ms