Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
PKNOX1P55347 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
PKNOX1P55347 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.74□□□□□ -1.81
PKNOX1P55347 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
PKNOX1P55347 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PKNOX1P55347 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PKNOX1P55347 AC073429.2-201ENST00000569694 1444 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 METTL21EP-201ENST00000298105 713 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 MIR142-201ENST00000384835 87 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC3.73□□□□□ -1.81
PKNOX1P55347 HMGB1P13-201ENST00000406019 642 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.73□□□□□ -1.81
PKNOX1P55347 RNU4-6P-201ENST00000410804 122 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 RPL7P29-201ENST00000437151 728 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.73□□□□□ -1.81
PKNOX1P55347 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.73□□□□□ -1.81
PKNOX1P55347 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC3.73□□□□□ -1.81
PKNOX1P55347 NIPA2P2-201ENST00000496376 1083 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 AC108941.1-201ENST00000502853 530 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC3.73□□□□□ -1.81
PKNOX1P55347 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.73□□□□□ -1.81
PKNOX1P55347 SETP12-201ENST00000514068 805 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 RNA5SP309-201ENST00000516670 106 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 RN7SKP82-201ENST00000516786 223 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.73□□□□□ -1.81
PKNOX1P55347 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.73□□□□□ -1.81
PKNOX1P55347 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.73□□□□□ -1.81
PKNOX1P55347 AC023575.1-201ENST00000580510 358 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 Z82195.1-201ENST00000604558 398 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 AC006946.3-201ENST00000609791 756 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PKNOX1P55347 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.73□□□□□ -1.81
PKNOX1P55347 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.73□□□□□ -1.81
PKNOX1P55347 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PKNOX1P55347 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.73□□□□□ -1.81
PKNOX1P55347 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PKNOX1P55347 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
PKNOX1P55347 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
PKNOX1P55347 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PKNOX1P55347 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PKNOX1P55347 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PKNOX1P55347 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PKNOX1P55347 RNA5SP97-201ENST00000365006 84 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PKNOX1P55347 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PKNOX1P55347 RNU2-6P-201ENST00000411404 190 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 RPL30P2-201ENST00000414021 291 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 AC023128.2-201ENST00000420880 1223 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 HIGD1AP12-201ENST00000427832 281 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PKNOX1P55347 ARL5AP2-201ENST00000444698 533 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 TPTE2P6-202ENST00000445572 1007 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 SBDSP1-204ENST00000453858 737 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 PPIAP15-201ENST00000479662 484 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 AC104687.1-201ENST00000485829 412 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 HMGB1P21-201ENST00000502313 581 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PKNOX1P55347 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC3.72□□□□□ -1.81
PKNOX1P55347 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.72□□□□□ -1.81
PKNOX1P55347 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 AC025260.1-201ENST00000548858 430 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.72□□□□□ -1.81
PKNOX1P55347 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.72□□□□□ -1.81
PKNOX1P55347 AC025918.2-201ENST00000558683 763 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.72□□□□□ -1.81
PKNOX1P55347 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 MIR3939-201ENST00000582614 106 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 KPNA2P3-201ENST00000584190 848 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 AC067852.4-201ENST00000590314 478 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 AC018618.2-201ENST00000604770 446 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC3.72□□□□□ -1.81
PKNOX1P55347 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC3.72□□□□□ -1.81
PKNOX1P55347 C2orf27A-204ENST00000623058 969 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 MIR492-201ENST00000638676 116 ntBASIC3.72□□□□□ -1.81
PKNOX1P55347 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PKNOX1P55347 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PKNOX1P55347 MTND4P31-201ENST00000425607 1343 ntBASIC3.71□□□□□ -1.81
PKNOX1P55347 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
PKNOX1P55347 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PKNOX1P55347 CEP170P1-201ENST00000502249 4587 ntBASIC3.71□□□□□ -1.82
PKNOX1P55347 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
PKNOX1P55347 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
PKNOX1P55347 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.71□□□□□ -1.82
PKNOX1P55347 AL391417.1-201ENST00000404100 426 ntBASIC3.71□□□□□ -1.82
PKNOX1P55347 AL590290.1-201ENST00000405336 380 ntBASIC3.71□□□□□ -1.82
PKNOX1P55347 AL356095.1-201ENST00000417217 199 ntBASIC3.71□□□□□ -1.82
PKNOX1P55347 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.71□□□□□ -1.82
PKNOX1P55347 AL159169.1-201ENST00000421119 127 ntBASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms