Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.99□□□□□ -1.45
LIG3P49916 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 XPOTP1-201ENST00000443317 2398 ntBASIC5.99□□□□□ -1.45
LIG3P49916 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.98□□□□□ -1.45
LIG3P49916 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.98□□□□□ -1.45
LIG3P49916 AC083899.1-201ENST00000454465 3819 ntBASIC5.98□□□□□ -1.45
LIG3P49916 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
LIG3P49916 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.98□□□□□ -1.45
LIG3P49916 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
LIG3P49916 AC073136.1-201ENST00000449426 2884 ntBASIC5.98□□□□□ -1.45
LIG3P49916 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
LIG3P49916 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.98□□□□□ -1.45
LIG3P49916 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.98□□□□□ -1.45
LIG3P49916 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
LIG3P49916 SELENOWP1-201ENST00000322792 252 ntBASIC5.98□□□□□ -1.45
LIG3P49916 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
LIG3P49916 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.98□□□□□ -1.45
LIG3P49916 MIR92A2-201ENST00000385299 75 ntBASIC5.98□□□□□ -1.45
LIG3P49916 MT-TD-201ENST00000387419 68 ntBASIC5.98□□□□□ -1.45
LIG3P49916 AL031679.1-201ENST00000400616 525 ntBASIC5.98□□□□□ -1.45
LIG3P49916 HMGB3P20-201ENST00000417997 600 ntBASIC5.98□□□□□ -1.45
LIG3P49916 ZNF90P2-204ENST00000419323 1075 ntBASIC5.98□□□□□ -1.45
LIG3P49916 RWDD4P2-201ENST00000426392 563 ntBASIC5.98□□□□□ -1.45
LIG3P49916 MTND1P14-201ENST00000427400 950 ntBASIC5.98□□□□□ -1.45
LIG3P49916 MTCO2P11-201ENST00000431069 680 ntBASIC5.98□□□□□ -1.45
LIG3P49916 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG3P49916 RPL23AP74-201ENST00000437246 471 ntBASIC5.98□□□□□ -1.45
LIG3P49916 AC004980.3-201ENST00000447046 365 ntBASIC5.98□□□□□ -1.45
LIG3P49916 AC002381.1-201ENST00000447049 280 ntBASIC5.98□□□□□ -1.45
LIG3P49916 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.98□□□□□ -1.45
LIG3P49916 AL354710.1-201ENST00000453641 246 ntBASIC5.98□□□□□ -1.45
LIG3P49916 GEMIN2P1-201ENST00000454246 752 ntBASIC5.98□□□□□ -1.45
LIG3P49916 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC5.98□□□□□ -1.45
LIG3P49916 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC5.98□□□□□ -1.45
LIG3P49916 AC090453.1-201ENST00000495560 436 ntBASIC5.98□□□□□ -1.45
LIG3P49916 AC008629.2-201ENST00000503783 483 ntBASIC5.98□□□□□ -1.45
LIG3P49916 AC097173.1-201ENST00000505862 819 ntBASIC5.98□□□□□ -1.45
LIG3P49916 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG3P49916 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG3P49916 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG3P49916 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG3P49916 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.98□□□□□ -1.45
LIG3P49916 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG3P49916 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG3P49916 OR5BC1P-201ENST00000529327 739 ntBASIC5.98□□□□□ -1.45
LIG3P49916 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
LIG3P49916 LARP7P2-201ENST00000575306 125 ntBASIC5.98□□□□□ -1.45
LIG3P49916 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG3P49916 COX6CP7-201ENST00000597056 208 ntBASIC5.98□□□□□ -1.45
LIG3P49916 RPL12P25-202ENST00000598100 674 ntBASIC5.98□□□□□ -1.45
LIG3P49916 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
LIG3P49916 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC5.98□□□□□ -1.45
LIG3P49916 AL121757.2-201ENST00000611223 313 ntBASIC5.98□□□□□ -1.45
LIG3P49916 uc_338.26-201ENST00000612659 160 ntBASIC5.98□□□□□ -1.45
LIG3P49916 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG3P49916 AL445264.1-201ENST00000621719 171 ntBASIC5.98□□□□□ -1.45
LIG3P49916 AC139792.3-201ENST00000623525 224 ntBASIC5.98□□□□□ -1.45
LIG3P49916 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.98□□□□□ -1.45
LIG3P49916 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.98□□□□□ -1.45
LIG3P49916 MIR3662-201ENST00000637030 95 ntBASIC5.98□□□□□ -1.45
LIG3P49916 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC5.98□□□□□ -1.45
LIG3P49916 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.98□□□□□ -1.45
LIG3P49916 GVINP1-202ENST00000531871 7271 ntBASIC5.98□□□□□ -1.45
LIG3P49916 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.98□□□□□ -1.45
LIG3P49916 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.98□□□□□ -1.45
LIG3P49916 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
LIG3P49916 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.98□□□□□ -1.45
LIG3P49916 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.98□□□□□ -1.45
LIG3P49916 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.98□□□□□ -1.45
LIG3P49916 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.98□□□□□ -1.45
LIG3P49916 AC025574.1-201ENST00000554784 1653 ntBASIC5.98□□□□□ -1.45
LIG3P49916 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
LIG3P49916 THAP12P5-201ENST00000405864 2275 ntBASIC5.97□□□□□ -1.45
LIG3P49916 AC027088.4-201ENST00000611559 1947 ntBASIC5.97□□□□□ -1.45
LIG3P49916 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
LIG3P49916 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
LIG3P49916 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIG3P49916 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
LIG3P49916 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
LIG3P49916 AC092079.1-201ENST00000558620 1985 ntBASIC5.97□□□□□ -1.45
LIG3P49916 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.97□□□□□ -1.45
LIG3P49916 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIG3P49916 RNU4-76P-201ENST00000364509 141 ntBASIC5.97□□□□□ -1.45
LIG3P49916 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LIG3P49916 Y_RNA.481-201ENST00000384373 102 ntBASIC5.97□□□□□ -1.45
LIG3P49916 AL356776.1-201ENST00000406574 447 ntBASIC5.97□□□□□ -1.45
LIG3P49916 MIR1203-201ENST00000408812 85 ntBASIC5.97□□□□□ -1.45
LIG3P49916 MTND3P17-201ENST00000416968 344 ntBASIC5.97□□□□□ -1.45
LIG3P49916 AC104837.2-201ENST00000427236 424 ntBASIC5.97□□□□□ -1.45
LIG3P49916 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.97□□□□□ -1.45
LIG3P49916 RPS29P14-201ENST00000431518 171 ntBASIC5.97□□□□□ -1.45
LIG3P49916 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.97□□□□□ -1.45
LIG3P49916 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC5.97□□□□□ -1.45
LIG3P49916 RPL36AP15-201ENST00000444514 266 ntBASIC5.97□□□□□ -1.45
LIG3P49916 AC132479.1-201ENST00000449160 144 ntBASIC5.97□□□□□ -1.45
LIG3P49916 MTND1P12-201ENST00000455231 147 ntBASIC5.97□□□□□ -1.45
LIG3P49916 AC104164.1-201ENST00000460282 590 ntBASIC5.97□□□□□ -1.45
LIG3P49916 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.97□□□□□ -1.45
LIG3P49916 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.97□□□□□ -1.45
LIG3P49916 PABPC1P3-201ENST00000469174 459 ntBASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms