Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC010329.2-201ENST00000595195 2737 ntBASIC5.05□□□□□ -1.6
MSX2P35548 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
MSX2P35548 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.05□□□□□ -1.6
MSX2P35548 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
MSX2P35548 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSX2P35548 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 OR5BR1P-201ENST00000524992 1330 ntBASIC5.04□□□□□ -1.6
MSX2P35548 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 RNU1-150P-201ENST00000362491 162 ntBASIC5.04□□□□□ -1.6
MSX2P35548 RNA5SP477-201ENST00000362639 119 ntBASIC5.04□□□□□ -1.6
MSX2P35548 RNA5SP131-201ENST00000365452 119 ntBASIC5.04□□□□□ -1.6
MSX2P35548 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
MSX2P35548 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
MSX2P35548 RNU6-317P-201ENST00000384031 107 ntBASIC5.04□□□□□ -1.6
MSX2P35548 CALM2P3-201ENST00000400429 449 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX2P35548 AC109780.2-201ENST00000413467 845 ntBASIC5.04□□□□□ -1.6
MSX2P35548 BOLA3P4-201ENST00000418151 400 ntBASIC5.04□□□□□ -1.6
MSX2P35548 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX2P35548 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX2P35548 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX2P35548 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC5.04□□□□□ -1.6
MSX2P35548 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX2P35548 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX2P35548 RPS24P8-201ENST00000431490 402 ntBASIC5.04□□□□□ -1.6
MSX2P35548 CLUHP1-201ENST00000435012 1190 ntBASIC5.04□□□□□ -1.6
MSX2P35548 OR6D1P-201ENST00000436165 939 ntBASIC5.04□□□□□ -1.6
MSX2P35548 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.04□□□□□ -1.6
MSX2P35548 UBE2V1P5-201ENST00000440070 405 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AC092809.1-201ENST00000441469 474 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 RPL39P6-201ENST00000448289 150 ntBASIC5.04□□□□□ -1.6
MSX2P35548 VDAC2P4-201ENST00000452925 711 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AC002553.2-201ENST00000453217 340 ntBASIC5.04□□□□□ -1.6
MSX2P35548 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
MSX2P35548 AC058823.1-201ENST00000485315 474 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AC019235.1-201ENST00000503847 207 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX2P35548 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.04□□□□□ -1.6
MSX2P35548 AL671862.1-201ENST00000515851 349 ntBASIC5.04□□□□□ -1.6
MSX2P35548 MTCO2P4-201ENST00000517968 247 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX2P35548 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX2P35548 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.04□□□□□ -1.6
MSX2P35548 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 AC068993.1-201ENST00000546724 589 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC5.04□□□□□ -1.6
MSX2P35548 AL390334.1-201ENST00000556395 450 ntBASIC5.04□□□□□ -1.6
MSX2P35548 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 AC002519.2-203ENST00000567043 837 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AC009101.1-201ENST00000568135 242 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.04□□□□□ -1.6
MSX2P35548 MEMO1P5-201ENST00000604810 406 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AC069304.2-201ENST00000605154 435 ntBASIC5.04□□□□□ -1.6
MSX2P35548 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 AC136475.10-201ENST00000620253 385 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AL359880.1-201ENST00000621879 266 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AC120349.2-201ENST00000625002 298 ntBASIC5.04□□□□□ -1.6
MSX2P35548 MIR6863-201ENST00000636112 90 ntBASIC5.04□□□□□ -1.6
MSX2P35548 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
MSX2P35548 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.04□□□□□ -1.6
MSX2P35548 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.04□□□□□ -1.6
MSX2P35548 RNF6P1-201ENST00000444889 1784 ntBASIC5.04□□□□□ -1.6
MSX2P35548 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
MSX2P35548 CASC19-280ENST00000642102 1351 ntBASIC5.04□□□□□ -1.6
MSX2P35548 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
MSX2P35548 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.03□□□□□ -1.6
MSX2P35548 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX2P35548 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
MSX2P35548 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.03□□□□□ -1.6
MSX2P35548 OR4K15-201ENST00000305051 1216 ntBASIC5.03□□□□□ -1.6
MSX2P35548 RNA5SP435-201ENST00000364044 108 ntBASIC5.03□□□□□ -1.6
MSX2P35548 RN7SKP6-201ENST00000364795 319 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms