Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PSMA2P1-201ENST00000526365 646 ntBASIC3.96□□□□□ -1.78
COL4A5P29400 AC087276.1-201ENST00000529659 480 ntBASIC3.96□□□□□ -1.78
COL4A5P29400 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.96□□□□□ -1.78
COL4A5P29400 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A5P29400 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A5P29400 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A5P29400 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.96□□□□□ -1.78
COL4A5P29400 AL645568.2-201ENST00000432815 1337 ntBASIC3.96□□□□□ -1.78
COL4A5P29400 LINC02471-203ENST00000641941 4752 ntBASIC3.96□□□□□ -1.78
COL4A5P29400 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.96□□□□□ -1.78
COL4A5P29400 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC3.95□□□□□ -1.78
COL4A5P29400 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A5P29400 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A5P29400 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
COL4A5P29400 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A5P29400 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.95□□□□□ -1.78
COL4A5P29400 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A5P29400 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A5P29400 BX890604.2-201ENST00000427883 474 ntBASIC3.95□□□□□ -1.78
COL4A5P29400 AL356535.1-201ENST00000440335 398 ntBASIC3.95□□□□□ -1.78
COL4A5P29400 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.95□□□□□ -1.78
COL4A5P29400 RPL21P6-201ENST00000479171 504 ntBASIC3.95□□□□□ -1.78
COL4A5P29400 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.95□□□□□ -1.78
COL4A5P29400 AC027309.2-201ENST00000520566 192 ntBASIC3.95□□□□□ -1.78
COL4A5P29400 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.95□□□□□ -1.78
COL4A5P29400 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.95□□□□□ -1.78
COL4A5P29400 AC016590.3-201ENST00000611171 753 ntBASIC3.95□□□□□ -1.78
COL4A5P29400 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC3.95□□□□□ -1.78
COL4A5P29400 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A5P29400 AF117829.1-206ENST00000621883 3802 ntBASIC3.95□□□□□ -1.78
COL4A5P29400 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC3.95□□□□□ -1.78
COL4A5P29400 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.95□□□□□ -1.78
COL4A5P29400 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
COL4A5P29400 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
COL4A5P29400 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.94□□□□□ -1.78
COL4A5P29400 AC239809.1-201ENST00000450470 217 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A5P29400 AC026782.2-201ENST00000510845 636 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 AC026801.2-201ENST00000515352 425 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A5P29400 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC3.94□□□□□ -1.78
COL4A5P29400 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.94□□□□□ -1.78
COL4A5P29400 OR51C1P-201ENST00000608504 942 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
COL4A5P29400 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A5P29400 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A5P29400 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A5P29400 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A5P29400 SNORD74.4-201ENST00000364129 80 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 RNU6-7-201ENST00000364784 107 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 RNU6-8-201ENST00000365467 107 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.94□□□□□ -1.78
COL4A5P29400 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.94□□□□□ -1.78
COL4A5P29400 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC3.94□□□□□ -1.78
COL4A5P29400 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC3.94□□□□□ -1.78
COL4A5P29400 AC004924.1-201ENST00000480160 781 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
COL4A5P29400 RNA5SP154-201ENST00000516193 111 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.94□□□□□ -1.78
COL4A5P29400 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.94□□□□□ -1.78
COL4A5P29400 AC005242.1-201ENST00000585658 438 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 BNIP3P10-201ENST00000605360 577 ntBASIC3.94□□□□□ -1.78
COL4A5P29400 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.93□□□□□ -1.78
COL4A5P29400 AC005002.1-201ENST00000447458 540 ntBASIC3.93□□□□□ -1.78
COL4A5P29400 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC3.93□□□□□ -1.78
COL4A5P29400 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.93□□□□□ -1.78
COL4A5P29400 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 MIR3162-201ENST00000581818 82 ntBASIC3.93□□□□□ -1.78
COL4A5P29400 MIR3945-201ENST00000581853 98 ntBASIC3.93□□□□□ -1.78
COL4A5P29400 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.93□□□□□ -1.78
COL4A5P29400 BDH2P1-201ENST00000602288 736 ntBASIC3.93□□□□□ -1.78
COL4A5P29400 AC008638.3-201ENST00000603341 463 ntBASIC3.93□□□□□ -1.78
COL4A5P29400 AC104763.2-201ENST00000604179 382 ntBASIC3.93□□□□□ -1.78
COL4A5P29400 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.93□□□□□ -1.78
COL4A5P29400 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.93□□□□□ -1.78
COL4A5P29400 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A5P29400 MTCO1P24-201ENST00000515438 1558 ntBASIC3.93□□□□□ -1.78
COL4A5P29400 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A5P29400 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A5P29400 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.92□□□□□ -1.78
COL4A5P29400 OR51C1P-202ENST00000641159 1444 ntBASIC3.92□□□□□ -1.78
COL4A5P29400 AC083843.2-201ENST00000568248 6253 ntBASIC3.92□□□□□ -1.78
COL4A5P29400 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.92□□□□□ -1.78
COL4A5P29400 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A5P29400 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
COL4A5P29400 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
COL4A5P29400 MIR93-201ENST00000385024 80 ntBASIC3.92□□□□□ -1.78
COL4A5P29400 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.92□□□□□ -1.78
COL4A5P29400 MRPS18BP2-201ENST00000434310 759 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms