Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 RPS12P23-201ENST00000419579 400 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 AL049610.1-201ENST00000423374 372 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HLA-DMBP28068 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 RPL21P11-201ENST00000461458 483 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 GAPDHP36-201ENST00000480688 918 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 RNU6-352P-201ENST00000516908 107 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 RNU1-45P-201ENST00000517191 141 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 MTCO1P49-201ENST00000523429 802 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC2.87□□□□□ -1.95
HLA-DMBP28068 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 AC034105.4-201ENST00000568304 277 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 AC022884.3-201ENST00000579571 248 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 AL137849.1-201ENST00000604767 169 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 PACRG-211ENST00000621363 360 ntTSL 5 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 OR6C71P-202ENST00000641886 1107 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 AC006042.3-201ENST00000454684 1469 ntBASIC2.87□□□□□ -1.95
HLA-DMBP28068 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
HLA-DMBP28068 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HLA-DMBP28068 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HLA-DMBP28068 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HLA-DMBP28068 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HLA-DMBP28068 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
HLA-DMBP28068 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 AC138393.1-206ENST00000540997 1886 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 RNA5SP97-201ENST00000365006 84 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 SNORA62.3-201ENST00000365110 153 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 AL359837.1-201ENST00000381357 287 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 MIR199A2-201ENST00000385289 110 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 SNORA48.7-201ENST00000391302 135 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 ZNF736P2Y-201ENST00000416040 1279 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 RPL31P20-201ENST00000449593 360 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 RPL5P13-201ENST00000462840 709 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 RPL23AP14-201ENST00000468281 468 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 AC078785.3-201ENST00000476607 425 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 RPS3AP6-201ENST00000484430 795 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 AP001086.1-201ENST00000494882 321 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 AC022790.1-201ENST00000522872 204 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 PTS-202ENST00000524931 696 ntTSL 3 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 AC092747.2-201ENST00000545069 983 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 RN7SL703P-201ENST00000578485 302 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 AC115989.2-201ENST00000578640 563 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 MIR5685-201ENST00000579080 79 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 AP001180.3-201ENST00000582221 145 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 PDCD6IPP1-202ENST00000622242 1064 ntBASIC2.86□□□□□ -1.95
HLA-DMBP28068 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
HLA-DMBP28068 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HLA-DMBP28068 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 RNU1-85P-201ENST00000364127 164 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms