Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.7□□□□□ -1.82
TREX1Q9NSU2 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
TREX1Q9NSU2 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.7□□□□□ -1.82
TREX1Q9NSU2 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AP004289.2-201ENST00000444413 1457 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 USP8P1-201ENST00000494673 3183 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 RPL7P60-201ENST00000397636 735 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 MTHFD2P2-201ENST00000407725 247 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 RNU6-628P-201ENST00000410675 107 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 BTF3P9-201ENST00000418784 283 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AL355994.1-201ENST00000424379 260 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AL353898.1-201ENST00000444055 238 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 HMGB3P30-201ENST00000457863 606 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AC007991.1-201ENST00000522680 631 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AL121766.1-201ENST00000547436 487 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AGGF1P6-201ENST00000569213 976 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AC005021.1-201ENST00000608730 355 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AC243654.2-201ENST00000612843 443 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
TREX1Q9NSU2 AP000553.6-201ENST00000641242 118 ntBASIC3.69□□□□□ -1.82
TREX1Q9NSU2 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 RNU6-670P-201ENST00000364312 104 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 RNU6-564P-201ENST00000410983 104 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 RAB28P1-201ENST00000411517 641 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 AC013404.1-201ENST00000413068 249 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 TCEA1P4-201ENST00000415066 844 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 AP000873.1-201ENST00000463987 400 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 NPM1P17-201ENST00000479221 602 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 TRAV31-201ENST00000502780 342 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 RN7SKP21-201ENST00000516503 220 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 RN7SKP82-201ENST00000516786 223 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 HIGD1AP18-201ENST00000520730 278 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 AL355816.1-201ENST00000607951 118 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 AC012531.5-201ENST00000611375 151 ntBASIC3.68□□□□□ -1.82
TREX1Q9NSU2 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
TREX1Q9NSU2 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TREX1Q9NSU2 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.67□□□□□ -1.82
TREX1Q9NSU2 RNU6-666P-201ENST00000363499 107 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 RNA5SP42-201ENST00000364278 115 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 RNA5SP515-201ENST00000364570 118 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
TREX1Q9NSU2 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC3.67□□□□□ -1.82
TREX1Q9NSU2 PRELID3BP11-201ENST00000414230 479 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 RPL31P45-201ENST00000419532 356 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 AC002075.2-201ENST00000425207 252 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.67□□□□□ -1.82
TREX1Q9NSU2 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.67□□□□□ -1.82
TREX1Q9NSU2 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.67□□□□□ -1.82
TREX1Q9NSU2 CEACAMP4-201ENST00000457676 421 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 AC103987.1-201ENST00000473394 348 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 RPL23AP73-201ENST00000492507 471 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 HMGB1P21-201ENST00000502313 581 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 PANCR-201ENST00000503456 493 ntTSL 5 BASIC3.67□□□□□ -1.82
TREX1Q9NSU2 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
TREX1Q9NSU2 AC021146.7-201ENST00000509604 775 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 AC026402.1-201ENST00000513642 170 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 RN7SKP141-201ENST00000516167 338 ntBASIC3.67□□□□□ -1.82
TREX1Q9NSU2 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.67□□□□□ -1.82
TREX1Q9NSU2 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
TREX1Q9NSU2 CASP1-216ENST00000534497 825 ntTSL 5 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms