Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC095038.2-201ENST00000621464 1070 ntBASIC5.74□□□□□ -1.49
CHMP4AQ9BY43 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CHMP4AQ9BY43 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CHMP4AQ9BY43 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.74□□□□□ -1.49
CHMP4AQ9BY43 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CHMP4AQ9BY43 AC139769.1-204ENST00000472297 1931 ntBASIC5.74□□□□□ -1.49
CHMP4AQ9BY43 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.74□□□□□ -1.49
CHMP4AQ9BY43 AC068254.2-201ENST00000623938 3577 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 RNU1-94P-201ENST00000362627 173 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 SNORA62-201ENST00000365493 153 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 GCNT6-201ENST00000379591 934 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 RNU6-1181P-201ENST00000384191 106 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 MIR649-201ENST00000384843 97 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 MT-TC-201ENST00000387405 66 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 HSPE1P26-201ENST00000405341 275 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 MIR1271-201ENST00000408537 86 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 CEACAMP8-201ENST00000413902 580 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 IFNNP1-201ENST00000429219 553 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 HMGN2P7-201ENST00000456186 273 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 NF1P3-201ENST00000457709 450 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 snoU13.3-201ENST00000459441 104 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 RN7SL98P-201ENST00000462271 300 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 NCOR1P1-202ENST00000486162 291 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AC013356.1-201ENST00000489027 564 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 TRAV31-201ENST00000502780 342 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AC005798.1-201ENST00000513715 387 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 RNU6-334P-201ENST00000517072 102 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 RN7SL176P-201ENST00000580352 264 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 RN7SL622P-201ENST00000585292 275 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AC015911.5-201ENST00000587076 451 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AC002487.1-201ENST00000604565 994 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AC091979.2-201ENST00000607514 214 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AC090425.2-201ENST00000608818 501 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AP000943.4-201ENST00000622912 357 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AF001550.2-201ENST00000636643 217 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 EXOC5P1-201ENST00000510543 1969 ntBASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CHMP4AQ9BY43 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 AL359893.1-201ENST00000447628 1580 ntBASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 KPNA2P2-201ENST00000419546 1489 ntBASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 RNU1-85P-201ENST00000364127 164 ntBASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 AL359643.1-201ENST00000404109 423 ntBASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 RPS29P17-201ENST00000430795 166 ntBASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 CEACAMP4-201ENST00000457676 421 ntBASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 RPL21P126-201ENST00000470049 478 ntBASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 RNA5SP446-201ENST00000515955 82 ntBASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 AC020910.2-201ENST00000603635 610 ntBASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 AC015871.5-202ENST00000623252 701 ntBASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 NXPH1-205ENST00000602349 1953 ntBASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.72□□□□□ -1.49
CHMP4AQ9BY43 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.71□□□□□ -1.49
CHMP4AQ9BY43 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC5.71□□□□□ -1.49
CHMP4AQ9BY43 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.49
CHMP4AQ9BY43 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 RNA5SP307-201ENST00000362863 116 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 RNA5SP509-201ENST00000364577 119 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 MIR659-201ENST00000384963 97 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 SNORA74C-2-201ENST00000411179 201 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 TMSB10P2-201ENST00000416049 131 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 MTND2P16-201ENST00000419987 799 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 AC114973.1-201ENST00000429057 632 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 TRIM60P9Y-201ENST00000438459 816 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 TRIM60P11Y-201ENST00000445313 801 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms