Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RN7SKP235-201ENST00000410662 305 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 SNORA74C-2-201ENST00000411179 201 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC092638.1-201ENST00000411966 1275 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 EIF1P3-201ENST00000423841 334 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AL157831.1-201ENST00000426134 473 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AL117339.2-201ENST00000430475 180 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 PTGES3P1-201ENST00000439531 483 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC004854.1-201ENST00000440356 349 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC073587.1-201ENST00000447093 876 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC091153.1-201ENST00000466297 402 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 GTF2IP9-201ENST00000502460 301 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AL592156.1-201ENST00000508758 304 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AL352979.3-201ENST00000553515 247 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 ZNF971P-201ENST00000562068 1249 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC006116.5-201ENST00000591936 559 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 FAM27D1-201ENST00000612308 341 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC005086.4-201ENST00000623065 213 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AL445363.3-201ENST00000623080 671 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC034229.5-201ENST00000624258 185 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AC008785.1-201ENST00000624475 456 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 CR392039.4-201ENST00000624968 501 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AL121594.5-201ENST00000631724 573 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 ATE1-AS1-202ENST00000636460 506 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 FP325313.1-201ENST00000638228 703 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 MAPK10-304ENST00000641341 3984 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 AP001273.1-201ENST00000624493 3152 ntBASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
CCDC3Q9BQI4 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL512646.1-201ENST00000269395 1077 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 ANKRD36P1-201ENST00000344424 659 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 RNU6-353P-201ENST00000364266 108 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 RNA5SP151-201ENST00000365632 117 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL359837.1-201ENST00000381357 287 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 MIR525-201ENST00000384978 85 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 MTCO2P8-201ENST00000412213 658 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 TRIM60P5Y-201ENST00000413946 574 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC009237.10-201ENST00000414112 510 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 RPS7P9-201ENST00000414704 586 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL356095.1-201ENST00000417217 199 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 SFR1P2-201ENST00000421841 730 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC246680.2-201ENST00000422106 389 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC009965.2-201ENST00000425328 970 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL357520.1-201ENST00000441557 453 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 RRM2P4-201ENST00000441721 562 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL929288.2-201ENST00000446368 407 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 RPS27AP15-201ENST00000447672 466 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 SNORA84-201ENST00000459229 133 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 RPL5P30-201ENST00000465511 891 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC104164.3-201ENST00000467363 1258 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC020593.1-201ENST00000507399 299 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC104417.1-201ENST00000523974 751 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC105233.3-201ENST00000531125 744 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC087897.1-201ENST00000550134 156 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 HMGB3P26-201ENST00000560051 582 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC023824.3-201ENST00000569003 562 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 BNIP3P33-201ENST00000598912 569 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC024060.1-201ENST00000607052 494 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 MIR6867-201ENST00000610636 67 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AC104985.3-201ENST00000623479 597 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms