Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AC093156.1-201ENST00000440382 670 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 snoU13.15-201ENST00000459407 104 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AC110794.1-201ENST00000505816 425 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AC021146.3-201ENST00000511911 260 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 MTCO1P8-201ENST00000416914 1523 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS13AQ96RL7 Z83843.1-201ENST00000604070 3685 ntBASIC3.24□□□□□ -1.89
VPS13AQ96RL7 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 AL022322.2-201ENST00000624072 20397 ntBASIC3.23□□□□□ -1.89
VPS13AQ96RL7 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 snoU13.26-201ENST00000459452 105 ntBASIC3.23□□□□□ -1.89
VPS13AQ96RL7 KLKP1-201ENST00000595979 403 ntBASIC3.23□□□□□ -1.89
VPS13AQ96RL7 AC004832.5-201ENST00000608677 401 ntBASIC3.23□□□□□ -1.89
VPS13AQ96RL7 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 AL513477.1-202ENST00000417061 214 ntBASIC3.23□□□□□ -1.89
VPS13AQ96RL7 NPM1P11-201ENST00000417106 855 ntBASIC3.23□□□□□ -1.89
VPS13AQ96RL7 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 AL136097.1-201ENST00000456945 913 ntBASIC3.23□□□□□ -1.89
VPS13AQ96RL7 RPS17P11-201ENST00000474297 293 ntBASIC3.23□□□□□ -1.89
VPS13AQ96RL7 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS13AQ96RL7 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 SNORA70B-201ENST00000384210 135 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 RSL24D1P4-201ENST00000400938 484 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 OR4C2P-201ENST00000530855 1064 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC104446.1-201ENST00000613728 1321 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 RN7SL585P-201ENST00000470538 280 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC008413.1-201ENST00000511864 177 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC006363.1-201ENST00000603806 463 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AL590808.1-201ENST00000618696 141 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 ATP5F1P6-201ENST00000402768 767 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 VN1R8P-201ENST00000407739 893 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC019097.1-201ENST00000424783 735 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 RPS4XP2-201ENST00000458402 793 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC068724.1-201ENST00000487100 792 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 SETP12-201ENST00000514068 805 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC068020.1-201ENST00000594215 661 ntBASIC3.22□□□□□ -1.89
VPS13AQ96RL7 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
VPS13AQ96RL7 AC006484.1-201ENST00000435086 1884 ntBASIC3.21□□□□□ -1.89
VPS13AQ96RL7 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.21□□□□□ -1.89
VPS13AQ96RL7 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS13AQ96RL7 AC006480.1-201ENST00000449887 378 ntBASIC3.21□□□□□ -1.9
VPS13AQ96RL7 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS13AQ96RL7 KCTD9P6-201ENST00000522306 950 ntBASIC3.21□□□□□ -1.9
VPS13AQ96RL7 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VPS13AQ96RL7 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.21□□□□□ -1.9
VPS13AQ96RL7 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.21□□□□□ -1.9
VPS13AQ96RL7 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS13AQ96RL7 MTND6P33-201ENST00000571794 183 ntBASIC3.21□□□□□ -1.9
VPS13AQ96RL7 VN1R90P-201ENST00000595717 726 ntBASIC3.21□□□□□ -1.9
VPS13AQ96RL7 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS13AQ96RL7 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS13AQ96RL7 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS13AQ96RL7 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VPS13AQ96RL7 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VPS13AQ96RL7 U3.12-201ENST00000364498 214 ntBASIC3.21□□□□□ -1.9
VPS13AQ96RL7 SNORA18.3-201ENST00000384122 132 ntBASIC3.21□□□□□ -1.9
VPS13AQ96RL7 RPS24P12-201ENST00000402084 394 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms