Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 AL161729.3-201ENST00000603533 673 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AL451044.1-201ENST00000604867 238 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AL450270.1-201ENST00000606160 391 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC090246.1-201ENST00000616499 426 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC066616.2-201ENST00000559334 1481 ntBASIC4.1□□□□□ -1.75
VPS39Q96JC1 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS39Q96JC1 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS39Q96JC1 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC139713.2-214ENST00000642059 1811 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS39Q96JC1 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 AL133383.2-201ENST00000622958 2336 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS39Q96JC1 RNU6-543P-201ENST00000362576 108 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS39Q96JC1 UBE2V1P11-201ENST00000411559 285 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 FAR2P2-201ENST00000413041 594 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC011742.1-201ENST00000431448 434 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 AL513321.1-201ENST00000441175 761 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC006011.1-201ENST00000442758 349 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 EXTL2P1-201ENST00000446218 416 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 NPM1P49-201ENST00000448027 714 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 AL162151.2-201ENST00000448875 158 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 CYCSP42-201ENST00000450823 238 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 ANP32BP2-201ENST00000454525 545 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 NFU1-207ENST00000462320 558 ntTSL 4 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC025674.1-201ENST00000507074 324 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 COL6A4P2-205ENST00000509855 506 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 HIGD1AP3-201ENST00000515857 278 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 SNORA70.14-201ENST00000516205 110 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC008802.1-201ENST00000519121 791 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 OR5D17P-201ENST00000531492 978 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC068790.4-201ENST00000602474 263 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 OR4H6P-202ENST00000603819 340 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC114878.2-201ENST00000604863 1251 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 MIR1264-201ENST00000616374 69 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 MIR4727-201ENST00000622232 55 ntBASIC4.09□□□□□ -1.75
VPS39Q96JC1 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS39Q96JC1 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS39Q96JC1 AC116667.1-201ENST00000604855 2072 ntBASIC4.09□□□□□ -1.76
VPS39Q96JC1 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
VPS39Q96JC1 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS39Q96JC1 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS39Q96JC1 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS39Q96JC1 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS39Q96JC1 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 SNORA60-201ENST00000362396 134 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS39Q96JC1 EIF5P1-201ENST00000400019 1231 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS39Q96JC1 MIR1251-201ENST00000408552 70 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS39Q96JC1 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 AL391219.1-201ENST00000422570 483 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 YWHAEP5-201ENST00000431545 765 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS39Q96JC1 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS39Q96JC1 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 HMGB3P22-202ENST00000451823 572 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 RPL7P1-201ENST00000468161 747 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 RPL7P9-201ENST00000468715 747 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 RN7SL303P-201ENST00000469773 251 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 GAPDHP36-201ENST00000480688 918 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 RN7SL459P-201ENST00000481078 302 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 AC008885.2-201ENST00000509506 930 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 AC099522.1-202ENST00000514718 367 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 AC083923.1-201ENST00000523708 376 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 AP003168.1-201ENST00000530091 307 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 PSMB7P1-201ENST00000556349 514 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 AC090616.5-202ENST00000582111 297 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC4.08□□□□□ -1.76
VPS39Q96JC1 YWHAQP7-201ENST00000603536 658 ntBASIC4.08□□□□□ -1.76
VPS39Q96JC1 OR2BH1P-201ENST00000608850 864 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 144 ms