Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 TRMT13-203ENST00000370143 476 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 OR13C3-201ENST00000374781 1108 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC092638.1-201ENST00000411966 1275 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 HMGN2P35-201ENST00000412164 270 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 NRBF2P2-201ENST00000413087 861 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC023128.2-201ENST00000420880 1223 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC009965.2-201ENST00000425328 970 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AL390879.2-203ENST00000426943 1121 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC068287.1-201ENST00000430283 295 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 XKRYP6-201ENST00000440468 1116 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 XKRYP3-201ENST00000442113 1116 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 SETD6P1-201ENST00000444575 317 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 RPL36AP39-201ENST00000445859 318 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AP000705.1-201ENST00000454567 350 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 RPL31P13-201ENST00000484151 370 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 RPS3AP6-201ENST00000484430 795 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 RN7SL568P-201ENST00000493069 298 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 RPL7P23-201ENST00000493874 747 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 PDLIM1P4-201ENST00000504327 1006 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 BTF3P13-201ENST00000513224 490 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 TBCA-203ENST00000517679 545 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC012574.1-201ENST00000523874 252 ntTSL 5 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 BRD9P1-201ENST00000529855 560 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC022404.1-201ENST00000555320 273 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 TVP23BP1-201ENST00000557500 617 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 MIR3667-201ENST00000581025 74 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC096947.1-201ENST00000603233 470 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC113368.1-201ENST00000603736 382 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 RNA5SP108-201ENST00000605921 117 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 MIR6741-201ENST00000618782 63 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC091905.4-201ENST00000623432 202 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 CCT7-217ENST00000626868 249 ntTSL 5 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AL121594.5-201ENST00000631724 573 ntBASIC2.07□□□□□ -2.08
LINC00643Q86TS7 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 OSBPL9P4-201ENST00000371707 1800 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 RNA5SP97-201ENST00000365006 84 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 MIR181B1-201ENST00000385240 110 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 ZNF736P2Y-201ENST00000416040 1279 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 RPS26P13-201ENST00000419030 330 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 UQCRBP1-201ENST00000421129 336 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AC012065.2-201ENST00000421295 375 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 COX6CP17-201ENST00000421389 185 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AC004074.1-201ENST00000421810 1063 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AC005189.1-201ENST00000431286 310 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 Z74696.2-201ENST00000436514 498 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 PPIAP3-201ENST00000450588 505 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 YWHAEP1-201ENST00000453697 763 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 FCF1P8-201ENST00000510322 597 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 MTCYBP37-201ENST00000510642 1133 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 SNORA31.15-201ENST00000516771 132 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 RN7SKP147-201ENST00000517154 244 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AC006512.2-201ENST00000543250 486 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms