Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
UBE3DQ7Z6J8 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.64□□□□□ -1.51
UBE3DQ7Z6J8 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
UBE3DQ7Z6J8 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
UBE3DQ7Z6J8 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
UBE3DQ7Z6J8 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 PWAR1-201ENST00000624188 2414 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC105074.1-201ENST00000623380 3095 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 Y_RNA.128-201ENST00000363391 112 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AL078604.1-201ENST00000404609 466 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AL353678.1-201ENST00000422735 741 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC245884.2-201ENST00000426257 404 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AL663074.2-201ENST00000440621 479 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 DDX3P2-201ENST00000446138 111 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 REG1CP-206ENST00000447469 496 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 RPS20P32-201ENST00000456044 356 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 RNU7-63P-201ENST00000459054 62 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC068228.1-201ENST00000461723 211 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 PFN1P6-201ENST00000476786 399 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC011005.3-201ENST00000491624 395 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 RN7SL193P-201ENST00000491708 276 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 LSM3P4-201ENST00000502948 309 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 KLHL2P1-201ENST00000508691 521 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 MIR2117-201ENST00000516780 80 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 OR4R1P-201ENST00000529879 463 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 ZNF705CP-201ENST00000530515 889 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 HMGB1P42-201ENST00000532126 553 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC107958.1-201ENST00000556576 290 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC116312.1-201ENST00000606841 314 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC009237.17-201ENST00000618111 748 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC245014.3-201ENST00000618589 347 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC022106.2-201ENST00000620114 757 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 AC090971.5-201ENST00000621102 293 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 RIOK3P1-201ENST00000418778 1528 ntBASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC5.63□□□□□ -1.51
UBE3DQ7Z6J8 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 RPL7P26-201ENST00000333817 754 ntBASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 RNA5SP273-201ENST00000362484 113 ntBASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 Y_RNA.387-201ENST00000383918 102 ntBASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 MIR548P-201ENST00000408336 84 ntBASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 NAP1L1P2-201ENST00000414182 1089 ntBASIC5.62□□□□□ -1.51
UBE3DQ7Z6J8 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 158.1 ms