Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC3.23□□□□□ -1.89
CHD3Q12873 HMGN1P11-201ENST00000508668 303 ntBASIC3.23□□□□□ -1.89
CHD3Q12873 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3.23□□□□□ -1.89
CHD3Q12873 AL390816.3-201ENST00000604527 1066 ntBASIC3.23□□□□□ -1.89
CHD3Q12873 AL355365.1-201ENST00000616480 294 ntBASIC3.23□□□□□ -1.89
CHD3Q12873 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.23□□□□□ -1.89
CHD3Q12873 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
CHD3Q12873 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.23□□□□□ -1.89
CHD3Q12873 AC066616.2-201ENST00000559334 1481 ntBASIC3.23□□□□□ -1.89
CHD3Q12873 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
CHD3Q12873 AC107021.2-201ENST00000567714 2095 ntBASIC3.23□□□□□ -1.89
CHD3Q12873 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
CHD3Q12873 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.23□□□□□ -1.89
CHD3Q12873 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.23□□□□□ -1.89
CHD3Q12873 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.22□□□□□ -1.89
CHD3Q12873 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
CHD3Q12873 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
CHD3Q12873 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
CHD3Q12873 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CHD3Q12873 AC127526.1-201ENST00000417526 366 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 SYF2P2-201ENST00000417620 583 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 AC002075.2-201ENST00000425207 252 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC3.22□□□□□ -1.89
CHD3Q12873 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.22□□□□□ -1.89
CHD3Q12873 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.22□□□□□ -1.89
CHD3Q12873 AC098824.1-201ENST00000453565 980 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 AC099560.2-201ENST00000457554 255 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 RPS3AP50-201ENST00000487064 803 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
CHD3Q12873 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC3.22□□□□□ -1.89
CHD3Q12873 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.22□□□□□ -1.89
CHD3Q12873 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC3.22□□□□□ -1.89
CHD3Q12873 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.22□□□□□ -1.89
CHD3Q12873 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.22□□□□□ -1.89
CHD3Q12873 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.22□□□□□ -1.89
CHD3Q12873 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC3.22□□□□□ -1.89
CHD3Q12873 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CHD3Q12873 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CHD3Q12873 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
CHD3Q12873 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CHD3Q12873 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.22□□□□□ -1.89
CHD3Q12873 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.22□□□□□ -1.89
CHD3Q12873 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CHD3Q12873 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.22□□□□□ -1.89
CHD3Q12873 AL049781.1-201ENST00000623195 3585 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 RNU1-18P-201ENST00000363062 164 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CHD3Q12873 SNORA48.2-201ENST00000390926 124 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 RPL7AP73-201ENST00000413490 353 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 Z97055.1-201ENST00000419730 712 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.22□□□□□ -1.89
CHD3Q12873 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC3.22□□□□□ -1.89
CHD3Q12873 AC017015.1-201ENST00000477387 286 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 S100A11P1-201ENST00000477525 312 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 RN7SL271P-201ENST00000487601 295 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 AC068305.1-201ENST00000497406 726 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 AC108941.1-201ENST00000502853 530 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC3.22□□□□□ -1.89
CHD3Q12873 RNA5SP208-201ENST00000516156 78 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 AC024224.1-201ENST00000538284 609 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 CBX3P5-201ENST00000552017 521 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 KLKP1-201ENST00000595979 403 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.22□□□□□ -1.89
CHD3Q12873 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.22□□□□□ -1.89
CHD3Q12873 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.22□□□□□ -1.89
CHD3Q12873 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
CHD3Q12873 EXOC5P1-201ENST00000510543 1969 ntBASIC3.22□□□□□ -1.89
CHD3Q12873 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.22□□□□□ -1.89
CHD3Q12873 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.21□□□□□ -1.89
CHD3Q12873 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
CHD3Q12873 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CHD3Q12873 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CHD3Q12873 RNVU1-14-201ENST00000384770 164 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 AC127537.2-201ENST00000439258 465 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 AC245517.2-201ENST00000442890 346 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 VN1R25P-201ENST00000443385 738 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 OR52Y1P-201ENST00000452418 828 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 VN1R40P-201ENST00000455196 941 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 CYCSP53-201ENST00000455540 265 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.21□□□□□ -1.9
CHD3Q12873 RNU7-170P-201ENST00000459303 61 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 RN7SL93P-201ENST00000463035 293 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.21□□□□□ -1.9
CHD3Q12873 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.21□□□□□ -1.9
CHD3Q12873 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.21□□□□□ -1.9
CHD3Q12873 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.21□□□□□ -1.9
CHD3Q12873 RPL23AP94-201ENST00000512518 302 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.21□□□□□ -1.9
CHD3Q12873 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.21□□□□□ -1.9
CHD3Q12873 OR7E13P-201ENST00000526052 910 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC3.21□□□□□ -1.9
CHD3Q12873 EIF1P6-201ENST00000600054 334 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 AC116312.1-201ENST00000606841 314 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 AP003392.5-201ENST00000607857 415 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.21□□□□□ -1.9
CHD3Q12873 SCARNA15.3-201ENST00000626315 122 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 SCARNA4.1-201ENST00000628597 123 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 AC244258.1-201ENST00000637553 1071 ntBASIC3.21□□□□□ -1.9
CHD3Q12873 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.21□□□□□ -1.9
CHD3Q12873 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms